Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46832 * 2 1 4 4 C 1.50700 * 109.47115 * 119.99816 * 2 1 3 5 5 H 1.07998 * 119.99739 * 114.37556 * 4 2 1 6 6 C 1.37876 * 119.99740 * 294.37732 * 4 2 1 7 7 N 1.31519 * 119.99758 * 156.62085 * 6 4 2 8 8 Si 1.86794 * 120.00248 * 336.61419 * 6 4 2 9 9 H 1.48501 * 109.47373 * 180.02562 * 8 6 4 10 10 H 1.48504 * 109.47266 * 300.00505 * 8 6 4 11 11 H 1.48506 * 109.47213 * 60.00468 * 8 6 4 12 12 C 1.52996 * 109.47203 * 240.00118 * 2 1 3 13 13 H 1.08998 * 110.43303 * 298.91071 * 12 2 1 14 14 C 1.54622 * 110.48619 * 176.22852 * 12 2 1 15 15 C 1.54480 * 101.76493 * 266.11667 * 14 12 2 16 16 N 1.46761 * 105.47340 * 334.58180 * 15 14 12 17 17 C 1.46500 * 124.35055 * 197.03414 * 16 15 14 18 18 C 1.34422 * 111.30013 * 17.01806 * 16 15 14 19 19 O 1.21280 * 124.93963 * 179.62401 * 18 16 15 20 20 H 1.09002 * 109.47128 * 52.68822 * 1 2 3 21 21 H 1.09001 * 109.47164 * 172.68099 * 1 2 3 22 22 H 1.08994 * 109.47265 * 292.68071 * 1 2 3 23 23 H 0.96991 * 119.99916 * 354.93000 * 7 6 4 24 24 H 1.09003 * 110.97336 * 24.23772 * 14 12 2 25 25 H 1.09008 * 110.97101 * 148.00110 * 14 12 2 26 26 H 1.09003 * 110.24877 * 215.58398 * 15 14 12 27 27 H 1.08997 * 110.31782 * 93.62323 * 15 14 12 28 28 H 1.09002 * 109.46787 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.47349 * 300.00071 * 17 16 15 30 30 H 1.08997 * 109.46941 * 60.00484 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5763 -1.6384 1.1340 6 6 1.7975 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4722 1.6544 2.6657 9 1 1.2520 1.9747 4.0989 10 1 2.6416 2.4189 2.1621 11 1 0.2650 2.0248 1.8841 12 6 2.0400 -0.7212 -1.2492 13 1 1.7013 -1.7572 -1.2554 14 6 3.5830 -0.6529 -1.3215 15 6 3.8021 0.5952 -2.2051 16 7 2.5853 0.7189 -3.0164 17 6 2.4820 1.5279 -4.2334 18 6 1.5780 -0.0057 -2.4995 19 8 0.4615 -0.0760 -2.9677 20 1 -0.3633 0.6229 -0.8174 21 1 -0.3633 -1.0193 -0.1309 22 1 -0.3633 0.3962 0.9481 23 1 1.8981 -1.9134 3.4362 24 1 4.0141 -0.5098 -0.3305 25 1 3.9912 -1.5445 -1.7977 26 1 4.6712 0.4546 -2.8478 27 1 3.9327 1.4809 -1.5834 28 1 1.4738 1.4460 -4.6395 29 1 2.6940 2.5704 -3.9958 30 1 3.2010 1.1696 -4.9700 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416834.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -66.293993 kcal Electronic energy + Delta-G solvation = -13057.472334 eV Core-core repulsion = 10851.415121 eV Total energy + Delta-G solvation = -2206.057213 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.52349 -37.54248 -36.50747 -34.04418 -31.92391 -28.12389 -27.51637 -26.53932 -23.17253 -21.64835 -20.24999 -19.49146 -17.62981 -17.05607 -16.54366 -15.75336 -15.11744 -14.85645 -14.85191 -14.21942 -13.90595 -13.73673 -13.40292 -13.18089 -13.01116 -12.62969 -12.41446 -12.17572 -11.88167 -11.50775 -11.42688 -11.03315 -10.64255 -10.30276 -9.64897 -8.67850 -6.27208 1.49873 1.53744 1.58505 1.73479 2.15884 2.52956 3.05424 3.54835 3.71730 4.03289 4.20112 4.43439 4.46747 4.56623 4.64814 4.70069 4.85898 4.87938 4.93442 4.98107 5.19359 5.29099 5.37929 5.56599 5.69265 6.04672 6.09576 6.14180 6.66296 7.20311 7.44205 8.67850 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044797 B = 0.011968 C = 0.011742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.890998 B = 2338.987897 C = 2384.059325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.040 3.960 3 H 0.027 0.973 4 C -0.592 4.592 5 H 0.034 0.966 6 C -0.009 4.009 7 N -0.933 5.933 8 Si 1.069 2.931 9 H -0.291 1.291 10 H -0.255 1.255 11 H -0.264 1.264 12 C -0.107 4.107 13 H 0.075 0.925 14 C -0.120 4.120 15 C 0.108 3.892 16 N -0.625 5.625 17 C 0.089 3.911 18 C 0.514 3.486 19 O -0.579 6.579 20 H 0.034 0.966 21 H 0.033 0.967 22 H 0.039 0.961 23 H 0.256 0.744 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 6.119 -12.658 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.045 0.955 4 C -0.629 4.629 5 H 0.052 0.948 6 C -0.209 4.209 7 N -0.568 5.568 8 Si 0.891 3.109 9 H -0.217 1.217 10 H -0.180 1.180 11 H -0.189 1.189 12 C -0.129 4.129 13 H 0.093 0.907 14 C -0.158 4.158 15 C -0.014 4.014 16 N -0.358 5.358 17 C -0.052 4.052 18 C 0.303 3.697 19 O -0.459 6.459 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.242 7.326 -11.880 14.909 hybrid contribution -0.034 -1.794 -0.724 1.935 sum 5.208 5.532 -12.604 14.717 Atomic orbital electron populations 1.22066 0.98848 0.99671 0.99014 1.18745 0.92053 0.95473 0.91714 0.95474 1.21959 1.39387 1.09500 0.92092 0.94759 1.26885 0.92934 1.08859 0.92219 1.70968 1.47007 1.05720 1.33090 0.83722 0.78830 0.72285 0.76039 1.21720 1.17964 1.18913 1.21899 0.98299 0.99788 0.92901 0.90661 1.22606 0.93094 0.98481 1.01610 1.22260 0.86960 0.98576 0.93630 1.48362 1.13047 1.47312 1.27094 1.21739 1.03169 0.95273 0.85019 1.21307 0.83992 0.79219 0.85164 1.90595 1.22241 1.66302 1.66799 0.94666 0.94825 0.94243 0.93528 0.89078 0.89370 0.86922 0.90531 0.91812 0.90263 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.61 8.40 71.98 0.60 -6.01 16 2 C 0.04 1.85 1.47 -11.54 -0.02 1.83 16 3 H 0.03 1.24 6.71 -2.39 -0.02 1.22 16 4 C -0.59 -31.94 7.65 25.60 0.20 -31.74 16 5 H 0.03 1.98 7.93 -2.91 -0.02 1.96 16 6 C -0.01 -0.52 5.18 84.65 0.44 -0.08 16 7 N -0.93 -57.06 13.70 21.45 0.29 -56.77 16 8 Si 1.07 49.29 26.45 68.60 1.81 51.11 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.26 -11.54 6.18 99.48 0.61 -10.92 16 12 C -0.11 -4.31 2.45 -10.80 -0.03 -4.34 16 13 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 14 C -0.12 -3.76 6.51 31.65 0.21 -3.55 16 15 C 0.11 2.64 7.35 86.83 0.64 3.28 16 16 N -0.62 -18.36 3.33 -842.90 -2.81 -21.17 16 17 C 0.09 1.91 11.14 127.77 1.42 3.33 16 18 C 0.51 19.99 6.80 87.90 0.60 20.59 16 19 O -0.58 -26.28 16.16 -3.03 -0.05 -26.33 16 20 H 0.03 1.60 6.89 -2.39 -0.02 1.59 16 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.04 1.91 5.51 -2.39 -0.01 1.89 16 23 H 0.26 15.80 8.73 -92.72 -0.81 15.00 16 24 H 0.09 3.17 7.04 -2.39 -0.02 3.15 16 25 H 0.09 2.35 8.14 -2.38 -0.02 2.34 16 26 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.59 7.53 -2.39 -0.02 1.57 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.92 244.31 4.29 -63.62 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.98 Total: 6.22 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 4.06 Total: -16.69 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.52 Total: -77.93 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.05 Total: -26.33 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 1.81 Total: 51.11 kcal Total: -67.92 4.29 -63.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416834.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.670 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds