Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 13 13 H 1.09002 * 110.85781 * 59.30032 * 12 2 1 14 14 C 1.54633 * 110.97086 * 295.51394 * 12 2 1 15 15 C 1.51345 * 104.16452 * 217.10495 * 14 12 2 16 16 O 1.21284 * 124.92512 * 196.22497 * 15 14 12 17 17 N 1.34416 * 110.13335 * 16.20197 * 15 14 12 18 18 C 1.46497 * 124.35281 * 180.45911 * 17 15 14 19 19 C 1.46765 * 111.29745 * 0.43373 * 17 15 14 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08996 * 110.48541 * 335.75760 * 14 12 2 25 25 H 1.08996 * 110.48536 * 98.40321 * 14 12 2 26 26 H 1.08993 * 109.47142 * 269.97846 * 18 17 15 27 27 H 1.08999 * 109.46992 * 29.97319 * 18 17 15 28 28 H 1.09001 * 109.47464 * 149.97251 * 18 17 15 29 29 H 1.09000 * 110.24556 * 223.97810 * 19 17 15 30 30 H 1.09009 * 110.31685 * 102.02832 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 1 1.6791 -1.7493 1.2784 14 6 1.6382 0.0429 2.5322 15 6 2.8295 -0.1231 3.4506 16 8 2.8185 0.0814 4.6461 17 7 3.9013 -0.5305 2.7491 18 6 5.2184 -0.7972 3.3324 19 6 3.5823 -0.6744 1.3238 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.4706 1.0971 2.3116 25 1 0.7477 -0.4009 2.9773 26 1 5.8137 0.1157 3.3182 27 1 5.0982 -1.1365 4.3612 28 1 5.7234 -1.5693 2.7518 29 1 4.0071 -1.5993 0.9337 30 1 3.9613 0.1800 0.7630 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = -47.992706 kcal Electronic energy + Delta-G solvation = -12763.700324 eV Core-core repulsion = 10558.436714 eV Total energy + Delta-G solvation = -2205.263610 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.90224 -36.39673 -34.44217 -32.19636 -29.53501 -27.15726 -25.82199 -24.92716 -21.93709 -19.28533 -19.03342 -16.65253 -16.04689 -15.61215 -14.91761 -14.52997 -13.41257 -13.24476 -13.14493 -12.61846 -12.33587 -12.09329 -11.87009 -11.48475 -11.08107 -10.94261 -10.63524 -10.56141 -10.19165 -9.84602 -9.65732 -9.09892 -8.81529 -8.39275 -8.32082 -6.04173 -4.11709 3.00539 3.27477 3.33392 3.35004 3.46167 4.37983 4.91932 5.20911 5.27265 5.51105 5.55106 5.58513 5.76106 5.83919 6.11760 6.19458 6.41086 6.63220 6.70699 6.88845 6.93462 7.12313 7.27495 7.49797 7.66204 7.89537 8.07680 8.36171 8.58267 8.91185 9.53951 11.01437 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051173 B = 0.009832 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.035901 B = 2847.186847 C = 3263.171309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 H 0.030 0.970 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.084 4.084 13 H 0.076 0.924 14 C -0.151 4.151 15 C 0.515 3.485 16 O -0.556 6.556 17 N -0.627 5.627 18 C 0.097 3.903 19 C 0.114 3.886 20 H 0.026 0.974 21 H 0.083 0.917 22 H 0.010 0.990 23 H 0.261 0.739 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 -2.726 5.192 7.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.036 3.964 3 H 0.048 0.952 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.103 4.103 13 H 0.094 0.906 14 C -0.191 4.191 15 C 0.304 3.696 16 O -0.435 6.435 17 N -0.361 5.361 18 C -0.046 4.046 19 C -0.008 4.008 20 H 0.045 0.955 21 H 0.101 0.899 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.317 -2.523 5.690 7.575 hybrid contribution 0.415 -0.506 -1.022 1.214 sum 4.732 -3.029 4.668 7.304 Atomic orbital electron populations 1.21811 0.98374 0.99121 1.00298 1.18697 0.92820 0.95413 0.89490 0.95180 1.21099 1.31412 1.12430 0.90458 0.92617 1.24951 0.95020 0.94931 0.98967 1.69867 1.36491 1.22842 1.23502 0.86702 0.79165 0.79819 0.82553 1.20328 1.21360 1.20313 1.22339 0.92425 1.00123 0.95377 0.90584 1.22489 0.96463 1.03732 0.96381 1.21243 0.85829 0.75047 0.87476 1.90638 1.85230 1.52887 1.14762 1.48389 1.10390 1.66997 1.10298 1.21453 0.83496 1.00617 0.98987 1.22265 0.97534 1.02336 0.78678 0.95514 0.89864 0.97114 0.92907 0.88010 0.88955 0.93059 0.91320 0.91309 0.90997 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.80 37.16 0.33 -2.78 16 2 C 0.05 1.23 1.64 -91.78 -0.15 1.08 16 3 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 4 C -0.52 -12.91 8.08 -34.44 -0.28 -13.19 16 5 H 0.06 1.35 7.59 -52.49 -0.40 0.96 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C -0.08 -1.57 2.63 -88.99 -0.23 -1.80 16 13 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 14 C -0.15 -2.65 5.49 -26.71 -0.15 -2.79 16 15 C 0.51 9.63 8.02 -10.83 -0.09 9.54 16 16 O -0.56 -11.87 17.60 5.55 0.10 -11.78 16 17 N -0.63 -10.45 3.33 -180.27 -0.60 -11.05 16 18 C 0.10 1.28 10.96 59.85 0.66 1.94 16 19 C 0.11 1.96 6.26 -3.12 -0.02 1.94 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 22 H 0.01 0.20 7.44 -51.93 -0.39 -0.19 16 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.10 1.79 7.88 -51.93 -0.41 1.38 16 25 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.40 7.88 -51.92 -0.41 0.99 16 LS Contribution 250.36 15.07 3.77 3.77 Total: -1.00 -28.53 250.36 -5.57 -34.11 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.42 Total: -2.13 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.03 Total: -4.52 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.03 Total: -34.67 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.10 Total: -11.78 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.53 -5.57 -34.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.886 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds