Wall clock time and date at job start Mon Mar 30 2020 02:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 13 13 H 1.09002 * 110.85781 * 59.30032 * 12 2 1 14 14 C 1.54633 * 110.97086 * 295.51394 * 12 2 1 15 15 C 1.51345 * 104.16452 * 217.10495 * 14 12 2 16 16 O 1.21284 * 124.92512 * 196.22497 * 15 14 12 17 17 N 1.34416 * 110.13335 * 16.20197 * 15 14 12 18 18 C 1.46497 * 124.35281 * 180.45911 * 17 15 14 19 19 C 1.46765 * 111.29745 * 0.43373 * 17 15 14 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.08996 * 110.48541 * 335.75760 * 14 12 2 25 25 H 1.08996 * 110.48536 * 98.40321 * 14 12 2 26 26 H 1.08993 * 109.47142 * 269.97846 * 18 17 15 27 27 H 1.08999 * 109.46992 * 29.97319 * 18 17 15 28 28 H 1.09001 * 109.47464 * 149.97251 * 18 17 15 29 29 H 1.09000 * 110.24556 * 223.97810 * 19 17 15 30 30 H 1.09009 * 110.31685 * 102.02832 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 1 1.6791 -1.7493 1.2784 14 6 1.6382 0.0429 2.5322 15 6 2.8295 -0.1231 3.4506 16 8 2.8185 0.0814 4.6461 17 7 3.9013 -0.5305 2.7491 18 6 5.2184 -0.7972 3.3324 19 6 3.5823 -0.6744 1.3238 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 1.4706 1.0971 2.3116 25 1 0.7477 -0.4009 2.9773 26 1 5.8137 0.1157 3.3182 27 1 5.0982 -1.1365 4.3612 28 1 5.7234 -1.5693 2.7518 29 1 4.0071 -1.5993 0.9337 30 1 3.9613 0.1800 0.7630 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433847.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:58 Heat of formation + Delta-G solvation = -65.066654 kcal Electronic energy + Delta-G solvation = -12764.440706 eV Core-core repulsion = 10558.436714 eV Total energy + Delta-G solvation = -2206.003992 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.34573 -37.98185 -36.06993 -33.89883 -31.17151 -28.64004 -27.13552 -26.80724 -23.56016 -20.95121 -20.44233 -18.40525 -17.53694 -17.18656 -16.39975 -16.24627 -14.99523 -14.65413 -14.53040 -14.35640 -13.95335 -13.37181 -13.16117 -13.11426 -12.82046 -12.72698 -12.32749 -12.18459 -12.03993 -11.53830 -11.29513 -10.77712 -10.59614 -10.35514 -9.66832 -8.01068 -6.13597 1.48589 1.49832 1.55042 1.55964 2.16438 2.49628 3.28193 3.53530 3.80140 4.07512 4.29563 4.44817 4.53838 4.75686 4.80229 4.83809 4.94209 5.00001 5.04201 5.21859 5.41458 5.44419 5.61571 5.71008 6.03015 6.10513 6.19959 6.44068 6.97875 7.16311 7.55000 9.03413 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051173 B = 0.009832 C = 0.008579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.035901 B = 2847.186847 C = 3263.171309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.293 1.293 11 H -0.270 1.270 12 C -0.078 4.078 13 H 0.082 0.918 14 C -0.145 4.145 15 C 0.511 3.489 16 O -0.586 6.586 17 N -0.622 5.622 18 C 0.090 3.910 19 C 0.120 3.880 20 H 0.029 0.971 21 H 0.052 0.948 22 H 0.031 0.969 23 H 0.258 0.742 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -3.888 5.359 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.036 3.964 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.219 1.219 11 H -0.195 1.195 12 C -0.097 4.097 13 H 0.101 0.899 14 C -0.185 4.185 15 C 0.300 3.700 16 O -0.468 6.468 17 N -0.354 5.354 18 C -0.051 4.051 19 C -0.002 4.002 20 H 0.048 0.952 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.310 -3.702 5.851 8.726 hybrid contribution 0.133 -0.133 -1.062 1.078 sum 5.442 -3.835 4.790 8.202 Atomic orbital electron populations 1.21689 0.98366 0.99089 0.99852 1.18610 0.92859 0.94205 0.90744 0.97808 1.21495 1.30758 1.12380 0.91262 0.91857 1.25678 0.95480 0.95652 1.01803 1.70013 1.37912 1.24311 1.23715 0.85783 0.78908 0.78745 0.79211 1.19830 1.21937 1.19489 1.22132 0.93658 0.99930 0.93945 0.89916 1.22441 0.96888 1.03560 0.95589 1.21339 0.86586 0.74940 0.87128 1.90623 1.85779 1.54495 1.15942 1.48472 1.11248 1.65861 1.09837 1.21721 0.82012 1.02123 0.99281 1.22151 0.96387 1.02768 0.78930 0.95203 0.92908 0.94961 0.93310 0.88227 0.87656 0.92001 0.91383 0.88525 0.89236 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.80 71.98 0.63 -5.24 16 2 C 0.05 2.43 1.64 -11.54 -0.02 2.41 16 3 H 0.00 0.19 8.11 -2.39 -0.02 0.17 16 4 C -0.52 -25.55 8.08 25.60 0.21 -25.34 16 5 H 0.06 2.95 7.59 -2.91 -0.02 2.93 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -50.67 11.32 21.45 0.24 -50.43 16 8 Si 0.95 40.98 29.54 68.60 2.03 43.01 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 C -0.08 -2.77 2.63 -9.74 -0.03 -2.80 16 13 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 14 C -0.14 -4.86 5.49 30.61 0.17 -4.70 16 15 C 0.51 18.27 8.02 87.92 0.71 18.98 16 16 O -0.59 -24.37 17.60 -3.04 -0.05 -24.42 16 17 N -0.62 -19.31 3.33 -842.83 -2.81 -22.12 16 18 C 0.09 2.12 10.96 127.77 1.40 3.52 16 19 C 0.12 3.85 6.26 86.83 0.54 4.39 16 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 22 H 0.03 1.24 7.44 -2.38 -0.02 1.23 16 23 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 24 H 0.10 3.40 7.88 -2.39 -0.02 3.38 16 25 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.65 7.93 -2.39 -0.02 1.63 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.07 2.33 7.88 -2.38 -0.02 2.31 16 Total: -1.00 -59.47 250.36 4.57 -54.90 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.10 Total: 6.75 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.06 Total: -7.69 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -2.57 Total: -72.54 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -59.47 4.57 -54.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433847.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.166 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds