Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 13 13 H 1.08999 * 110.86001 * 302.34279 * 12 2 1 14 14 C 1.54631 * 110.96774 * 178.54490 * 12 2 1 15 15 C 1.51285 * 104.19608 * 217.08375 * 14 12 2 16 16 O 1.21274 * 124.94121 * 196.21415 * 15 14 12 17 17 N 1.34419 * 110.11390 * 16.25692 * 15 14 12 18 18 C 1.46501 * 124.34873 * 180.42257 * 17 15 14 19 19 C 1.46762 * 111.30309 * 0.40724 * 17 15 14 20 20 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 24 24 H 1.08995 * 110.48945 * 335.76889 * 14 12 2 25 25 H 1.08998 * 110.48462 * 98.27853 * 14 12 2 26 26 H 1.08997 * 109.47154 * 0.03152 * 18 17 15 27 27 H 1.09000 * 109.47029 * 120.02243 * 18 17 15 28 28 H 1.08999 * 109.47411 * 240.02742 * 18 17 15 29 29 H 1.08995 * 110.24565 * 223.98645 * 19 17 15 30 30 H 1.08998 * 110.25351 * 101.98138 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 6 2.0401 -0.7213 -1.2492 13 1 1.6557 -1.7404 -1.2931 14 6 3.5854 -0.7098 -1.3026 15 6 3.9046 -0.5393 -2.7715 16 8 4.9852 -0.7566 -3.2773 17 7 2.8165 -0.1109 -3.4343 18 6 2.7753 0.1481 -4.8756 19 6 1.6749 0.0637 -2.5286 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7086 1.1614 3.4844 24 1 3.9808 0.1267 -0.7266 25 1 3.9870 -1.6521 -0.9299 26 1 3.7527 -0.0607 -5.3104 27 1 2.0268 -0.4946 -5.3390 28 1 2.5156 1.1923 -5.0499 29 1 0.7708 -0.3470 -2.9779 30 1 1.5355 1.1195 -2.2964 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433850.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = -65.255093 kcal Electronic energy + Delta-G solvation = -12760.865425 eV Core-core repulsion = 10554.853262 eV Total energy + Delta-G solvation = -2206.012163 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35321 -37.99937 -36.06940 -33.82451 -31.36224 -28.40947 -27.23327 -26.78833 -23.57985 -21.06962 -20.34673 -18.36398 -17.56725 -17.20441 -16.41982 -16.23143 -14.97012 -14.73743 -14.54923 -14.34323 -13.95185 -13.26864 -13.22730 -13.08877 -12.84783 -12.76453 -12.24935 -12.15256 -11.99649 -11.76739 -11.19761 -10.76066 -10.59227 -10.36953 -9.67219 -8.03340 -6.14545 1.44164 1.47112 1.54778 1.54997 2.15474 2.48072 3.25585 3.56520 3.79570 4.07153 4.29736 4.45077 4.57041 4.71533 4.81541 4.85769 4.94722 5.02602 5.08784 5.23526 5.41116 5.43444 5.62409 5.70851 6.03668 6.08044 6.22733 6.45104 6.96698 7.16308 7.53553 9.01077 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053219 B = 0.009721 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.001397 B = 2879.612185 C = 3275.694697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.078 4.078 13 H 0.082 0.918 14 C -0.136 4.136 15 C 0.511 3.489 16 O -0.587 6.587 17 N -0.621 5.621 18 C 0.087 3.913 19 C 0.111 3.889 20 H 0.029 0.971 21 H 0.051 0.949 22 H 0.039 0.961 23 H 0.258 0.742 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -1.154 -9.624 9.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 H 0.023 0.977 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.770 3.230 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.097 4.097 13 H 0.100 0.900 14 C -0.176 4.176 15 C 0.301 3.699 16 O -0.469 6.469 17 N -0.353 5.353 18 C -0.054 4.054 19 C -0.011 4.011 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.929 -1.131 -9.860 9.968 hybrid contribution 0.326 -0.225 1.171 1.237 sum -0.603 -1.356 -8.688 8.814 Atomic orbital electron populations 1.21675 0.97790 0.99204 1.00186 1.18621 0.93196 0.94112 0.90539 0.97733 1.21524 1.30516 1.12296 0.91616 0.92634 1.25620 0.95524 0.95726 1.01585 1.70000 1.37898 1.24136 1.23645 0.85780 0.77881 0.79355 0.79970 1.20747 1.21319 1.19356 1.22137 0.92794 1.00115 0.94693 0.89987 1.22239 0.98769 1.04613 0.91978 1.21362 0.83182 0.74928 0.90460 1.90613 1.26240 1.54779 1.75308 1.48390 1.12326 1.65234 1.09395 1.21754 1.03382 1.02560 0.77661 1.22330 0.88620 1.01054 0.89101 0.95164 0.93028 0.94168 0.93255 0.88822 0.88876 0.91321 0.89810 0.90271 0.88195 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.82 71.98 0.63 -4.94 16 2 C 0.05 2.41 1.65 -11.54 -0.02 2.39 16 3 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 4 C -0.52 -26.51 8.06 25.60 0.21 -26.30 16 5 H 0.06 2.78 7.53 -2.91 -0.02 2.76 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.94 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C -0.08 -2.81 2.63 -9.73 -0.03 -2.83 16 13 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 14 C -0.14 -5.04 5.67 30.59 0.17 -4.87 16 15 C 0.51 18.83 8.02 87.90 0.71 19.54 16 16 O -0.59 -25.21 17.35 -3.01 -0.05 -25.26 16 17 N -0.62 -18.55 3.33 -842.91 -2.81 -21.36 16 18 C 0.09 1.92 11.14 127.77 1.42 3.35 16 19 C 0.11 3.20 6.06 86.83 0.53 3.72 16 20 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 2.55 6.07 -2.39 -0.01 2.54 16 22 H 0.04 1.42 7.50 -2.39 -0.02 1.40 16 23 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 24 H 0.09 3.71 7.90 -2.39 -0.02 3.70 16 25 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 26 H 0.07 1.67 7.53 -2.39 -0.02 1.65 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.12 7.84 -2.39 -0.02 2.11 16 Total: -1.00 -61.14 249.84 4.59 -56.56 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.10 Total: 4.94 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.07 Total: -8.77 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.57 Total: -71.88 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -61.14 4.59 -56.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433850.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.698 kcal (2) G-P(sol) polarization free energy of solvation -61.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds