Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47595 * 2 1 4 4 C 1.50707 * 109.46973 * 240.00145 * 2 1 3 5 5 H 1.07997 * 119.99597 * 239.99501 * 4 2 1 6 6 C 1.37869 * 120.00146 * 60.00528 * 4 2 1 7 7 N 1.31520 * 119.99786 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00410 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47061 * 59.99559 * 8 6 4 10 10 H 1.48497 * 109.47472 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47238 * 300.00162 * 8 6 4 12 12 C 1.53005 * 109.47176 * 120.00397 * 2 1 3 13 13 H 1.08996 * 110.85624 * 63.78656 * 12 2 1 14 14 C 1.54625 * 110.96992 * 187.62240 * 12 2 1 15 15 C 1.51289 * 104.25608 * 142.69914 * 14 12 2 16 16 O 1.21278 * 124.94483 * 164.00904 * 15 14 12 17 17 N 1.34413 * 110.11057 * 344.14196 * 15 14 12 18 18 C 1.46506 * 124.34853 * 179.43995 * 17 15 14 19 19 C 1.46765 * 111.30426 * 359.17356 * 17 15 14 20 20 H 1.08997 * 109.47301 * 300.00023 * 1 2 3 21 21 H 1.09001 * 109.47113 * 59.99580 * 1 2 3 22 22 H 1.09000 * 109.47529 * 179.97438 * 1 2 3 23 23 H 0.97003 * 119.99581 * 180.02562 * 7 6 4 24 24 H 1.09002 * 110.48493 * 261.59463 * 14 12 2 25 25 H 1.08997 * 110.48708 * 24.10010 * 14 12 2 26 26 H 1.09001 * 109.47060 * 269.70428 * 18 17 15 27 27 H 1.09004 * 109.47073 * 29.69917 * 18 17 15 28 28 H 1.09000 * 109.47212 * 149.69999 * 18 17 15 29 29 H 1.08994 * 110.24801 * 136.28341 * 19 17 15 30 30 H 1.09000 * 110.24487 * 258.19587 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5196 -4.0082 10 1 1.8269 -0.4197 -5.2204 11 1 3.8075 -1.1189 -4.0077 12 6 2.0400 -0.7214 1.2492 13 1 1.7451 -1.7706 1.2390 14 6 3.5737 -0.5778 1.3837 15 6 3.8051 -0.4306 2.8715 16 8 4.8756 -0.5670 3.4249 17 7 2.6509 -0.1295 3.4912 18 6 2.5162 0.0703 4.9363 19 6 1.5442 -0.0204 2.5334 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7083 1.1610 -3.4844 24 1 4.0749 -1.4678 1.0031 25 1 3.9215 0.3099 0.8556 26 1 2.2808 -0.8807 5.4141 27 1 3.4526 0.4570 5.3384 28 1 1.7150 0.7832 5.1314 29 1 0.6590 -0.5248 2.9208 30 1 1.3224 1.0275 2.3311 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = -65.050660 kcal Electronic energy + Delta-G solvation = -12755.429152 eV Core-core repulsion = 10549.425854 eV Total energy + Delta-G solvation = -2206.003298 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35214 -38.00523 -36.06614 -33.83401 -31.36618 -28.40515 -27.21557 -26.80306 -23.61706 -21.05819 -20.30989 -18.42222 -17.55725 -17.20250 -16.41676 -16.20679 -14.99036 -14.75265 -14.52358 -14.32958 -13.94435 -13.30245 -13.23899 -13.11310 -12.84794 -12.73078 -12.29796 -12.16924 -11.97493 -11.74926 -11.20095 -10.76208 -10.59786 -10.36595 -9.67146 -8.03290 -6.14769 1.45865 1.47053 1.53303 1.54817 2.15310 2.48138 3.25453 3.55901 3.79753 4.06826 4.29736 4.43692 4.54628 4.71792 4.81279 4.85196 4.94887 5.02001 5.07345 5.23508 5.41601 5.43123 5.62217 5.70477 6.03435 6.08165 6.23042 6.45087 6.96266 7.16174 7.53325 9.00908 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054495 B = 0.009588 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.682782 B = 2919.559497 C = 3298.163815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.078 4.078 13 H 0.081 0.919 14 C -0.137 4.137 15 C 0.511 3.489 16 O -0.587 6.587 17 N -0.621 5.621 18 C 0.090 3.910 19 C 0.111 3.889 20 H 0.040 0.960 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.259 0.741 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -1.391 9.500 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.036 3.964 3 H 0.022 0.978 4 C -0.561 4.561 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.770 3.230 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.097 4.097 13 H 0.099 0.901 14 C -0.177 4.177 15 C 0.300 3.700 16 O -0.469 6.469 17 N -0.353 5.353 18 C -0.051 4.051 19 C -0.011 4.011 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.304 -1.330 9.757 9.933 hybrid contribution 0.344 -0.248 -1.156 1.231 sum -0.960 -1.578 8.601 8.797 Atomic orbital electron populations 1.21683 0.97754 0.99231 1.00229 1.18614 0.93225 0.94079 0.90514 0.97775 1.21493 1.30651 1.12312 0.91671 0.92713 1.25620 0.95519 0.95706 1.01592 1.69998 1.37835 1.24106 1.23724 0.85833 0.78684 0.78920 0.79520 1.19776 1.21430 1.20102 1.22130 0.92480 1.00480 0.94636 0.90052 1.22252 0.99164 1.04605 0.91701 1.21338 0.83182 0.74606 0.90847 1.90616 1.28497 1.54390 1.73392 1.48411 1.09693 1.68587 1.08646 1.21740 1.03315 1.02631 0.77430 1.22353 0.89277 1.01647 0.87844 0.94066 0.93041 0.95141 0.93232 0.88846 0.88853 0.91439 0.91856 0.88301 0.88221 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.75 71.98 0.63 -4.95 16 2 C 0.05 2.43 1.67 -11.54 -0.02 2.41 16 3 H 0.00 0.21 8.06 -2.39 -0.02 0.19 16 4 C -0.52 -26.65 8.17 25.60 0.21 -26.44 16 5 H 0.05 2.74 7.73 -2.91 -0.02 2.72 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -50.79 11.32 21.45 0.24 -50.55 16 8 Si 0.94 42.35 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 C -0.08 -2.81 2.63 -9.74 -0.03 -2.83 16 13 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 14 C -0.14 -5.07 6.00 30.59 0.18 -4.89 16 15 C 0.51 18.81 8.02 87.90 0.71 19.51 16 16 O -0.59 -25.22 17.59 -3.02 -0.05 -25.27 16 17 N -0.62 -18.50 3.33 -842.88 -2.81 -21.31 16 18 C 0.09 1.97 10.97 127.77 1.40 3.37 16 19 C 0.11 3.18 5.84 86.83 0.51 3.69 16 20 H 0.04 1.45 7.17 -2.39 -0.02 1.43 16 21 H 0.05 2.54 6.07 -2.39 -0.01 2.53 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 24 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 25 H 0.09 3.67 7.84 -2.39 -0.02 3.65 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.50 7.92 -2.38 -0.02 1.48 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.14 7.70 -2.39 -0.02 2.12 16 Total: -1.00 -61.31 250.07 4.55 -56.76 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.10 Total: 4.93 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.04 Total: -8.94 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -2.57 Total: -71.86 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -61.31 4.55 -56.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.288 kcal (2) G-P(sol) polarization free energy of solvation -61.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds