Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46603 * 2 1 4 4 C 1.50695 * 109.47080 * 120.00276 * 2 1 3 5 5 H 1.08001 * 120.00336 * 120.00353 * 4 2 1 6 6 C 1.37873 * 120.00181 * 299.99847 * 4 2 1 7 7 N 1.31516 * 119.99943 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00497 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47017 * 89.99800 * 8 6 4 10 10 H 1.48495 * 109.47260 * 210.00326 * 8 6 4 11 11 H 1.48504 * 109.46857 * 330.00091 * 8 6 4 12 12 C 1.53005 * 109.46927 * 240.00362 * 2 1 3 13 13 H 1.08999 * 110.88350 * 303.80694 * 12 2 1 14 14 C 1.54625 * 110.96992 * 67.62173 * 12 2 1 15 15 C 1.51289 * 104.25608 * 142.69914 * 14 12 2 16 16 O 1.21278 * 124.94490 * 164.01480 * 15 14 12 17 17 N 1.34413 * 110.11057 * 344.14196 * 15 14 12 18 18 C 1.46506 * 124.34853 * 179.43995 * 17 15 14 19 19 C 1.46765 * 111.30426 * 359.17356 * 17 15 14 20 20 H 1.08997 * 109.47200 * 299.99300 * 1 2 3 21 21 H 1.09001 * 109.47429 * 60.00012 * 1 2 3 22 22 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 23 23 H 0.97003 * 119.99874 * 179.97438 * 7 6 4 24 24 H 1.09002 * 110.48493 * 261.59463 * 14 12 2 25 25 H 1.08997 * 110.48708 * 24.10010 * 14 12 2 26 26 H 1.09001 * 109.47060 * 269.70428 * 18 17 15 27 27 H 1.09004 * 109.47073 * 29.69917 * 18 17 15 28 28 H 1.09000 * 109.47212 * 149.69999 * 18 17 15 29 29 H 1.08994 * 110.24801 * 136.28341 * 19 17 15 30 30 H 1.09000 * 110.24581 * 258.27839 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6304 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7121 12 6 2.0400 -0.7212 -1.2493 13 1 1.6352 -1.7316 -1.3071 14 6 1.7061 0.0826 -2.5273 15 6 2.9132 -0.1150 -3.4177 16 8 2.9439 0.1165 -4.6078 17 7 3.9458 -0.5870 -2.6983 18 6 5.2649 -0.9010 -3.2532 19 6 3.5842 -0.7414 -1.2843 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7082 1.1607 3.4845 24 1 0.8088 -0.3128 -3.0032 25 1 1.5774 1.1389 -2.2909 26 1 5.2853 -1.9424 -3.5745 27 1 5.4634 -0.2534 -4.1072 28 1 6.0273 -0.7410 -2.4908 29 1 3.9578 -1.6908 -0.9009 30 1 3.9857 0.0864 -0.6997 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = -65.106898 kcal Electronic energy + Delta-G solvation = -12768.017365 eV Core-core repulsion = 10562.011628 eV Total energy + Delta-G solvation = -2206.005737 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.34459 -37.98244 -36.06434 -33.89424 -31.18473 -28.63364 -27.13760 -26.80457 -23.54658 -20.96855 -20.45147 -18.38025 -17.54222 -17.20415 -16.39154 -16.20235 -15.01231 -14.68792 -14.48084 -14.36307 -13.98699 -13.33837 -13.18578 -13.11171 -12.81111 -12.76017 -12.29339 -12.17217 -12.05277 -11.55121 -11.28586 -10.78560 -10.57933 -10.36152 -9.65876 -8.01239 -6.13583 1.46881 1.49898 1.55390 1.57501 2.16844 2.49505 3.28238 3.53861 3.80697 4.07191 4.30358 4.43313 4.53842 4.76670 4.81398 4.83590 4.94288 5.00186 5.04514 5.21801 5.41483 5.44501 5.61692 5.71271 6.03082 6.11010 6.19953 6.44014 6.98079 7.16611 7.55064 9.03440 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050524 B = 0.009908 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.054527 B = 2825.384312 C = 3249.752191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 H 0.004 0.996 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.293 1.293 11 H -0.266 1.266 12 C -0.078 4.078 13 H 0.082 0.918 14 C -0.145 4.145 15 C 0.511 3.489 16 O -0.587 6.587 17 N -0.622 5.622 18 C 0.090 3.910 19 C 0.120 3.880 20 H 0.052 0.948 21 H 0.031 0.969 22 H 0.029 0.971 23 H 0.258 0.742 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 -3.945 -5.269 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.036 3.964 3 H 0.022 0.978 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.219 1.219 11 H -0.190 1.190 12 C -0.097 4.097 13 H 0.101 0.899 14 C -0.185 4.185 15 C 0.300 3.700 16 O -0.469 6.469 17 N -0.355 5.355 18 C -0.052 4.052 19 C -0.002 4.002 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.290 -3.759 -5.759 8.676 hybrid contribution 0.130 -0.135 1.066 1.083 sum 5.420 -3.894 -4.692 8.159 Atomic orbital electron populations 1.21684 0.98360 0.99099 0.99840 1.18619 0.92869 0.94213 0.90747 0.97792 1.21523 1.30637 1.12359 0.91229 0.91811 1.25679 0.95487 0.95674 1.01806 1.70025 1.37939 1.24363 1.23633 0.85723 0.77813 0.79430 0.79660 1.20473 1.21876 1.19011 1.22126 0.93874 0.99654 0.94003 0.89939 1.22429 0.96790 1.03340 0.95966 1.21313 0.86687 0.75174 0.86812 1.90621 1.85013 1.55097 1.16137 1.48486 1.12739 1.63838 1.10387 1.21719 0.82280 1.01313 0.99841 1.22147 0.95989 1.02764 0.79292 0.92902 0.94999 0.95180 0.93331 0.87644 0.88257 0.91466 0.91592 0.88817 0.89337 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.83 71.98 0.64 -5.23 16 2 C 0.05 2.42 1.66 -11.54 -0.02 2.40 16 3 H 0.00 0.20 8.06 -2.39 -0.02 0.18 16 4 C -0.52 -25.42 8.03 25.60 0.21 -25.21 16 5 H 0.06 2.97 7.48 -2.91 -0.02 2.95 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -50.60 11.32 21.45 0.24 -50.36 16 8 Si 0.95 40.97 29.54 68.60 2.03 42.99 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 C -0.08 -2.77 2.64 -9.74 -0.03 -2.80 16 13 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 14 C -0.15 -4.88 5.64 30.59 0.17 -4.71 16 15 C 0.51 18.30 8.02 87.90 0.71 19.00 16 16 O -0.59 -24.41 17.59 -3.02 -0.05 -24.46 16 17 N -0.62 -19.35 3.33 -842.88 -2.81 -22.16 16 18 C 0.09 2.12 10.97 127.77 1.40 3.53 16 19 C 0.12 3.87 6.08 86.83 0.53 4.40 16 20 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 21 H 0.03 1.23 7.55 -2.39 -0.02 1.21 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 24 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.10 3.39 7.84 -2.39 -0.02 3.37 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.63 7.92 -2.38 -0.02 1.61 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.07 2.37 7.89 -2.39 -0.02 2.35 16 Total: -1.00 -59.41 250.23 4.56 -54.85 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.10 Total: 6.70 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 4.05 Total: -7.56 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.57 Total: -72.52 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -59.41 4.56 -54.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.258 kcal (2) G-P(sol) polarization free energy of solvation -59.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds