Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00309 * 2 1 4 4 N 1.34774 * 119.99906 * 180.02562 * 2 1 3 5 5 C 1.47576 * 134.49457 * 179.97438 * 4 2 1 6 6 C 1.53951 * 86.11820 * 155.36318 * 5 4 2 7 7 C 1.52997 * 113.74342 * 137.95564 * 6 5 4 8 8 H 1.09002 * 109.47153 * 299.99749 * 7 6 5 9 9 C 1.53000 * 109.47060 * 60.00068 * 7 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47147 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46797 * 209.99607 * 14 12 10 17 17 H 1.48500 * 109.47032 * 329.99738 * 14 12 10 18 18 C 1.47587 * 134.49148 * 359.97438 * 4 2 1 19 19 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47060 * 300.00189 * 1 2 3 21 21 H 1.08997 * 109.47091 * 59.99173 * 1 2 3 22 22 H 1.09002 * 113.76820 * 41.06113 * 5 4 2 23 23 H 1.08996 * 113.87371 * 269.67365 * 5 4 2 24 24 H 1.09002 * 113.73932 * 269.15614 * 6 5 4 25 25 H 1.09001 * 109.47194 * 299.99650 * 9 7 6 26 26 H 1.08992 * 109.47399 * 59.99823 * 9 7 6 27 27 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 28 28 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 29 29 H 1.08994 * 113.76887 * 90.33756 * 18 4 2 30 30 H 1.08999 * 113.76776 * 318.93986 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6096 -1.5366 -0.0012 6 6 3.1595 -2.8623 0.6390 7 6 3.8698 -4.0929 0.0715 8 1 3.6717 -4.1658 -0.9979 9 6 5.3766 -3.9642 0.3036 10 6 3.3595 -5.3309 0.7629 11 1 2.6044 -5.2482 1.5306 12 6 3.8573 -6.5690 0.4161 13 7 4.7772 -6.6696 -0.5184 14 14 3.2252 -8.1034 1.2737 15 1 2.0573 -8.6405 0.5302 16 1 4.3003 -9.1270 1.3127 17 1 2.8156 -7.7626 2.6598 18 6 1.7862 -2.5893 -0.0007 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 4.2235 -0.9185 0.6540 23 1 4.0349 -1.6523 -0.9980 24 1 3.1496 -2.8423 1.7288 25 1 5.7461 -3.0688 -0.1962 26 1 5.5746 -3.8914 1.3729 27 1 5.8827 -4.8407 -0.1012 28 1 5.1277 -7.5406 -0.7621 29 1 1.6740 -3.0140 -0.9982 30 1 0.9442 -2.8116 0.6548 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260441385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = -16.412424 kcal Electronic energy + Delta-G solvation = -12542.376677 eV Core-core repulsion = 10338.482491 eV Total energy + Delta-G solvation = -2203.894186 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81969 -37.50656 -33.96429 -31.28589 -29.90977 -27.22031 -25.89891 -24.76697 -22.12079 -19.22190 -18.52166 -16.62211 -16.41562 -15.32335 -15.31348 -14.56181 -13.84796 -13.00069 -12.77821 -12.56167 -12.26197 -12.12470 -11.97300 -11.36452 -11.18238 -10.95118 -10.89227 -10.47747 -10.13761 -9.92233 -9.62766 -9.06408 -8.84444 -8.39584 -8.26073 -6.03579 -4.10742 2.90435 3.26215 3.27332 3.34593 3.36985 4.38844 4.79906 5.18327 5.27584 5.30545 5.46538 5.64397 5.73926 5.80154 5.90625 6.03438 6.09105 6.26648 6.59301 6.74857 6.90462 7.12949 7.27471 7.66961 7.89236 8.08084 8.11826 8.37861 8.45297 8.92595 9.54802 11.02046 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059608 B = 0.008365 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.622177 B = 3346.626629 C = 3677.629689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.525 3.475 3 O -0.567 6.567 4 N -0.644 5.644 5 C 0.104 3.896 6 C -0.100 4.100 7 C 0.053 3.947 8 H 0.030 0.970 9 C -0.138 4.138 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.109 3.891 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.009 0.991 26 H 0.026 0.974 27 H 0.083 0.917 28 H 0.260 0.740 29 H 0.087 0.913 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 5.552 0.670 8.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.315 3.685 3 O -0.447 6.447 4 N -0.379 5.379 5 C -0.017 4.017 6 C -0.119 4.119 7 C 0.034 3.966 8 H 0.048 0.952 9 C -0.196 4.196 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.013 4.013 19 H 0.094 0.906 20 H 0.108 0.892 21 H 0.108 0.892 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.028 0.972 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.702 6.157 0.579 8.412 hybrid contribution -0.369 -0.964 0.394 1.105 sum -6.072 5.193 0.974 8.049 Atomic orbital electron populations 1.21778 0.92145 1.04094 1.04539 1.20469 0.90098 0.82201 0.75715 1.90671 1.70943 1.30928 1.52173 1.50423 1.09934 1.05817 1.71687 1.23362 0.82474 0.94923 1.00982 1.23260 0.93727 0.94928 1.00029 1.18660 0.91874 0.89860 0.96243 0.95171 1.21791 0.99222 0.99911 0.98635 1.21135 1.22209 0.90875 1.20920 0.92613 1.24961 0.94968 0.98969 0.95060 1.69887 1.28356 1.24078 1.30505 0.86632 0.78492 0.83057 0.80030 1.20743 1.21297 1.19959 1.23385 0.99550 0.77072 1.01276 0.90607 0.89244 0.89173 0.91127 0.90003 0.89372 0.97238 0.95491 0.89879 0.92992 0.89461 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.34 36.00 0.37 -1.60 16 2 C 0.52 8.95 8.17 -10.99 -0.09 8.86 16 3 O -0.57 -11.85 17.83 5.55 0.10 -11.75 16 4 N -0.64 -10.99 3.61 -178.35 -0.64 -11.64 16 5 C 0.10 1.85 7.46 -2.97 -0.02 1.83 16 6 C -0.10 -1.88 3.25 -89.70 -0.29 -2.17 16 7 C 0.05 1.19 2.07 -91.77 -0.19 1.00 16 8 H 0.03 0.74 7.94 -51.93 -0.41 0.33 16 9 C -0.14 -3.12 8.77 37.16 0.33 -2.79 16 10 C -0.51 -13.00 8.56 -34.44 -0.29 -13.30 16 11 H 0.06 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 13 N -0.89 -24.37 11.32 55.43 0.63 -23.74 16 14 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.11 1.78 7.70 -2.97 -0.02 1.75 16 19 H 0.07 0.79 7.21 -51.93 -0.37 0.41 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 24 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 25 H 0.01 0.18 7.43 -51.93 -0.39 -0.21 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.09 1.41 7.96 -51.93 -0.41 0.99 16 30 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 LS Contribution 254.60 15.07 3.84 3.84 Total: -1.00 -29.30 254.60 -5.80 -35.10 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.39 Total: -2.23 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.31 Total: -4.89 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.02 Total: -35.38 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.10 Total: -11.75 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.30 -5.80 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.685 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds