Wall clock time and date at job start Mon Mar 30 2020 02:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00309 * 2 1 4 4 N 1.34774 * 119.99906 * 180.02562 * 2 1 3 5 5 C 1.47576 * 134.49457 * 179.97438 * 4 2 1 6 6 C 1.53951 * 86.11820 * 155.36318 * 5 4 2 7 7 C 1.52997 * 113.74342 * 137.95564 * 6 5 4 8 8 H 1.09002 * 109.47153 * 299.99749 * 7 6 5 9 9 C 1.53000 * 109.47060 * 60.00068 * 7 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47147 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46797 * 209.99607 * 14 12 10 17 17 H 1.48500 * 109.47032 * 329.99738 * 14 12 10 18 18 C 1.47587 * 134.49148 * 359.97438 * 4 2 1 19 19 H 1.08998 * 109.47384 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47060 * 300.00189 * 1 2 3 21 21 H 1.08997 * 109.47091 * 59.99173 * 1 2 3 22 22 H 1.09002 * 113.76820 * 41.06113 * 5 4 2 23 23 H 1.08996 * 113.87371 * 269.67365 * 5 4 2 24 24 H 1.09002 * 113.73932 * 269.15614 * 6 5 4 25 25 H 1.09001 * 109.47194 * 299.99650 * 9 7 6 26 26 H 1.08992 * 109.47399 * 59.99823 * 9 7 6 27 27 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 28 28 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 29 29 H 1.08994 * 113.76887 * 90.33756 * 18 4 2 30 30 H 1.08999 * 113.76776 * 318.93986 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6096 -1.5366 -0.0012 6 6 3.1595 -2.8623 0.6390 7 6 3.8698 -4.0929 0.0715 8 1 3.6717 -4.1658 -0.9979 9 6 5.3766 -3.9642 0.3036 10 6 3.3595 -5.3309 0.7629 11 1 2.6044 -5.2482 1.5306 12 6 3.8573 -6.5690 0.4161 13 7 4.7772 -6.6696 -0.5184 14 14 3.2252 -8.1034 1.2737 15 1 2.0573 -8.6405 0.5302 16 1 4.3003 -9.1270 1.3127 17 1 2.8156 -7.7626 2.6598 18 6 1.7862 -2.5893 -0.0007 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 4.2235 -0.9185 0.6540 23 1 4.0349 -1.6523 -0.9980 24 1 3.1496 -2.8423 1.7288 25 1 5.7461 -3.0688 -0.1962 26 1 5.5746 -3.8914 1.3729 27 1 5.8827 -4.8407 -0.1012 28 1 5.1277 -7.5406 -0.7621 29 1 1.6740 -3.0140 -0.9982 30 1 0.9442 -2.8116 0.6548 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:00 Heat of formation + Delta-G solvation = -34.511044 kcal Electronic energy + Delta-G solvation = -12543.161492 eV Core-core repulsion = 10338.482491 eV Total energy + Delta-G solvation = -2204.679001 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.21670 -38.96302 -35.79059 -32.98437 -31.24255 -28.61024 -27.52332 -26.45167 -23.76978 -20.83778 -19.88325 -18.35437 -17.91166 -16.89913 -16.62420 -16.24395 -15.35127 -14.63387 -14.36612 -13.98108 -13.56904 -13.37272 -13.16948 -13.06243 -12.77495 -12.74168 -12.61063 -12.20500 -12.01111 -11.49253 -11.28277 -10.70003 -10.61653 -10.36941 -9.67120 -8.01970 -6.14612 1.46641 1.49390 1.57390 1.60426 1.96688 2.49285 3.26669 3.59331 3.80306 4.20546 4.24885 4.40248 4.55895 4.64169 4.66394 4.74409 4.86306 4.89186 5.02312 5.08755 5.20175 5.39249 5.48083 5.69843 6.01950 6.17160 6.43965 6.79922 6.97586 7.12516 7.53985 9.02552 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059608 B = 0.008365 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.622177 B = 3346.626629 C = 3677.629689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.517 3.483 3 O -0.612 6.612 4 N -0.644 5.644 5 C 0.103 3.897 6 C -0.099 4.099 7 C 0.053 3.947 8 H 0.008 0.992 9 C -0.132 4.132 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.012 3.988 13 N -0.920 5.920 14 Si 0.948 3.052 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.268 1.268 18 C 0.120 3.880 19 H 0.094 0.906 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.029 0.971 26 H 0.026 0.974 27 H 0.052 0.948 28 H 0.258 0.742 29 H 0.089 0.911 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 5.688 1.274 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.309 3.691 3 O -0.495 6.495 4 N -0.378 5.378 5 C -0.020 4.020 6 C -0.118 4.118 7 C 0.034 3.966 8 H 0.026 0.974 9 C -0.189 4.189 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.775 3.225 15 H -0.202 1.202 16 H -0.218 1.218 17 H -0.192 1.192 18 C -0.002 4.002 19 H 0.113 0.887 20 H 0.124 0.876 21 H 0.125 0.875 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.455 6.284 1.190 9.823 hybrid contribution 0.202 -0.983 0.198 1.023 sum -7.253 5.302 1.388 9.091 Atomic orbital electron populations 1.21815 0.87714 1.05871 1.06124 1.21448 0.92145 0.81161 0.74302 1.90651 1.72321 1.32372 1.54198 1.50466 1.09506 1.06402 1.71458 1.23290 0.83450 0.94418 1.00834 1.23064 0.95355 0.93476 0.99901 1.18568 0.92141 0.91007 0.94873 0.97367 1.21672 0.99275 0.99447 0.98547 1.21522 1.21862 0.91851 1.20682 0.92180 1.25689 0.95325 1.01834 0.95791 1.70025 1.29612 1.24427 1.31942 0.85703 0.77792 0.79706 0.79304 1.20208 1.21771 1.19230 1.23354 0.98884 0.76270 1.01662 0.88729 0.87581 0.87526 0.91182 0.90096 0.89423 0.95214 0.95499 0.92865 0.93276 0.89252 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.34 71.24 0.74 -2.41 16 2 C 0.52 16.55 8.17 87.66 0.72 17.27 16 3 O -0.61 -24.98 17.83 -3.04 -0.05 -25.04 16 4 N -0.64 -20.74 3.61 -836.57 -3.02 -23.75 16 5 C 0.10 3.53 7.46 86.48 0.65 4.17 16 6 C -0.10 -3.57 3.25 -10.14 -0.03 -3.60 16 7 C 0.05 2.39 2.07 -11.54 -0.02 2.37 16 8 H 0.01 0.40 7.94 -2.39 -0.02 0.39 16 9 C -0.13 -5.97 8.77 71.98 0.63 -5.34 16 10 C -0.52 -26.02 8.56 25.60 0.22 -25.80 16 11 H 0.06 2.89 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.62 5.30 84.65 0.45 1.07 16 13 N -0.92 -50.93 11.32 21.45 0.24 -50.68 16 14 Si 0.95 41.30 29.54 68.60 2.03 43.32 16 15 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 C 0.12 3.60 7.70 86.48 0.67 4.27 16 19 H 0.09 1.56 7.21 -2.39 -0.02 1.54 16 20 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.08 2.79 8.06 -2.39 -0.02 2.77 16 24 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.03 1.18 7.43 -2.39 -0.02 1.16 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 2.74 6.07 -2.39 -0.01 2.73 16 28 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 29 H 0.09 2.69 7.96 -2.39 -0.02 2.67 16 30 H 0.10 2.54 7.96 -2.39 -0.02 2.52 16 Total: -1.00 -62.21 254.60 4.31 -57.90 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.10 Total: 6.27 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.01 Total: -8.02 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.77 Total: -74.44 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -62.21 4.31 -57.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.389 kcal (2) G-P(sol) polarization free energy of solvation -62.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds