Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99838 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00282 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.52998 * 109.47270 * 240.00009 * 2 1 3 14 14 H 1.08998 * 110.43551 * 297.45815 * 13 2 1 15 15 C 1.54625 * 110.48668 * 59.99705 * 13 2 1 16 16 C 1.54486 * 101.76578 * 93.87856 * 15 13 2 17 17 N 1.46768 * 105.46953 * 25.41851 * 16 15 13 18 18 C 1.34415 * 111.30144 * 342.98370 * 17 16 15 19 19 O 1.21284 * 124.94284 * 180.46102 * 18 17 16 20 20 H 1.08997 * 109.47437 * 299.99759 * 1 2 3 21 21 H 1.08995 * 109.47676 * 60.00319 * 1 2 3 22 22 H 1.09007 * 109.47149 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46922 * 174.99984 * 4 2 1 24 24 H 1.09003 * 109.46836 * 55.00740 * 4 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 26 26 H 1.09000 * 110.97487 * 211.99666 * 15 13 2 27 27 H 1.08997 * 110.97108 * 335.72856 * 15 13 2 28 28 H 1.09004 * 110.24370 * 144.41501 * 16 15 13 29 29 H 1.08995 * 110.24672 * 266.41777 * 16 15 13 30 30 H 0.96998 * 124.34581 * 162.98645 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5634 5.2496 10 1 1.9945 -0.1367 6.4621 11 1 2.0917 1.9237 5.1865 12 1 0.0196 0.6700 5.3095 13 6 2.0400 -0.7212 -1.2492 14 1 1.7229 -1.7640 -1.2428 15 6 1.5376 -0.0108 -2.5274 16 6 2.7160 0.9362 -2.8453 17 7 3.8973 0.3071 -2.2429 18 6 3.5471 -0.6238 -1.3387 19 8 4.3259 -1.2882 -0.6884 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.1264 -0.7994 1.2056 24 1 1.6054 -1.7198 1.2951 25 1 2.9243 -1.8413 4.7317 26 1 1.3824 -0.7254 -3.3356 27 1 0.6264 0.5531 -2.3277 28 1 2.8460 1.0276 -3.9237 29 1 2.5428 1.9163 -2.4011 30 1 4.8130 0.5340 -2.4682 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = -55.344936 kcal Electronic energy + Delta-G solvation = -12813.950960 eV Core-core repulsion = 10608.368533 eV Total energy + Delta-G solvation = -2205.582427 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.07156 -36.10837 -34.83642 -32.27634 -29.76023 -27.06622 -26.76688 -23.62198 -21.32163 -20.36903 -19.01151 -16.99239 -16.18763 -15.53747 -14.93041 -14.39903 -13.53876 -13.41894 -13.04761 -12.78148 -12.53347 -11.96361 -11.48560 -11.31674 -11.11401 -10.91114 -10.79201 -10.35878 -10.24891 -9.78717 -9.30213 -8.97560 -8.86194 -8.71868 -8.21163 -5.86561 -3.89080 3.16457 3.38688 3.43355 3.45021 3.71242 4.53614 4.73213 4.83882 5.02995 5.37648 5.47806 5.59551 5.73385 5.86024 6.04245 6.08052 6.22431 6.33516 6.53065 6.88382 7.05819 7.16024 7.24757 7.35950 7.83328 7.99650 8.16946 8.53558 8.76174 9.18330 9.72947 11.24369 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048551 B = 0.009937 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.579458 B = 2816.959169 C = 3092.459323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 H 0.057 0.943 4 C 0.021 3.979 5 C -0.517 4.517 6 H 0.053 0.947 7 C 0.056 3.944 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C -0.118 4.118 14 H 0.099 0.901 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.743 5.743 18 C 0.525 3.475 19 O -0.517 6.517 20 H 0.065 0.935 21 H 0.035 0.965 22 H 0.047 0.953 23 H 0.032 0.968 24 H 0.016 0.984 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 4.957 -13.609 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.016 4.016 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.214 1.214 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.139 4.139 14 H 0.117 0.883 15 C -0.175 4.175 16 C -0.019 4.019 17 N -0.400 5.400 18 C 0.311 3.689 19 O -0.391 6.391 20 H 0.084 0.916 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.516 4.430 -13.082 14.039 hybrid contribution 0.186 0.666 0.764 1.031 sum -2.330 5.096 -12.318 13.533 Atomic orbital electron populations 1.21782 0.95548 1.01203 1.00421 1.21059 0.95329 0.98770 0.93590 0.92421 1.19240 0.97659 0.95126 0.89614 1.21181 1.34930 1.08292 0.91163 0.92834 1.25027 0.95391 0.95100 0.98985 1.69990 1.38592 1.21080 1.23312 0.86729 0.78743 0.80132 0.82768 1.21374 1.20408 1.20351 1.22146 0.92346 1.02581 0.96850 0.88320 1.22795 0.98305 0.98821 0.97540 1.21967 0.85470 0.96759 0.97717 1.46236 1.08871 1.41203 1.43725 1.20954 0.91652 0.78551 0.77748 1.90769 1.58013 1.45911 1.44406 0.91592 0.94573 0.93345 0.94967 0.96610 0.93089 0.90734 0.88816 0.91100 0.91438 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.77 37.16 0.33 -2.02 16 2 C -0.07 -1.40 1.92 -90.62 -0.17 -1.57 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.02 0.56 4.33 -27.89 -0.12 0.44 16 5 C -0.52 -14.95 8.41 -34.44 -0.29 -15.24 16 6 H 0.05 1.48 7.06 -52.49 -0.37 1.10 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -28.13 13.29 55.43 0.74 -27.39 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C -0.12 -2.04 2.51 -90.63 -0.23 -2.26 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 15 C -0.14 -1.63 6.53 -25.10 -0.16 -1.80 16 16 C 0.11 1.16 7.78 -3.12 -0.02 1.13 16 17 N -0.74 -10.65 6.24 -59.20 -0.37 -11.02 16 18 C 0.52 10.15 7.30 -10.86 -0.08 10.07 16 19 O -0.52 -12.65 16.62 5.55 0.09 -12.56 16 20 H 0.07 1.28 6.95 -51.93 -0.36 0.92 16 21 H 0.04 0.50 6.13 -51.93 -0.32 0.18 16 22 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 23 H 0.03 0.98 6.30 -51.92 -0.33 0.65 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.01 5.85 -51.93 -0.30 0.71 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.40 4.98 8.96 -40.82 -0.37 4.62 16 LS Contribution 246.55 15.07 3.72 3.72 Total: -1.00 -34.56 246.55 -5.84 -40.39 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.14 Total: -0.70 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.85 Total: -9.68 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.37 Total: -38.41 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.56 -5.84 -40.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.952 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds