Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47103 * 119.99838 * 2 1 3 5 5 C 1.50694 * 109.47168 * 295.00282 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.52998 * 109.47270 * 240.00009 * 2 1 3 14 14 H 1.08998 * 110.43551 * 297.45815 * 13 2 1 15 15 C 1.54625 * 110.48668 * 59.99705 * 13 2 1 16 16 C 1.54486 * 101.76578 * 93.87856 * 15 13 2 17 17 N 1.46768 * 105.46953 * 25.41851 * 16 15 13 18 18 C 1.34415 * 111.30144 * 342.98370 * 17 16 15 19 19 O 1.21284 * 124.94284 * 180.46102 * 18 17 16 20 20 H 1.08997 * 109.47437 * 299.99759 * 1 2 3 21 21 H 1.08995 * 109.47676 * 60.00319 * 1 2 3 22 22 H 1.09007 * 109.47149 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46922 * 174.99984 * 4 2 1 24 24 H 1.09003 * 109.46836 * 55.00740 * 4 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 26 26 H 1.09000 * 110.97487 * 211.99666 * 15 13 2 27 27 H 1.08997 * 110.97108 * 335.72856 * 15 13 2 28 28 H 1.09004 * 110.24370 * 144.41501 * 16 15 13 29 29 H 1.08995 * 110.24672 * 266.41777 * 16 15 13 30 30 H 0.96998 * 124.34581 * 162.98645 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0799 0.9741 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6764 -1.5188 3.8511 9 14 1.4996 0.5634 5.2496 10 1 1.9945 -0.1367 6.4621 11 1 2.0917 1.9237 5.1865 12 1 0.0196 0.6700 5.3095 13 6 2.0400 -0.7212 -1.2492 14 1 1.7229 -1.7640 -1.2428 15 6 1.5376 -0.0108 -2.5274 16 6 2.7160 0.9362 -2.8453 17 7 3.8973 0.3071 -2.2429 18 6 3.5471 -0.6238 -1.3387 19 8 4.3259 -1.2882 -0.6884 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.1264 -0.7994 1.2056 24 1 1.6054 -1.7198 1.2951 25 1 2.9243 -1.8413 4.7317 26 1 1.3824 -0.7254 -3.3356 27 1 0.6264 0.5531 -2.3277 28 1 2.8460 1.0276 -3.9237 29 1 2.5428 1.9163 -2.4011 30 1 4.8130 0.5340 -2.4682 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501318.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = -81.756488 kcal Electronic energy + Delta-G solvation = -12815.096250 eV Core-core repulsion = 10608.368533 eV Total energy + Delta-G solvation = -2206.727718 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43964 -37.66458 -36.48372 -34.35130 -31.18551 -28.70980 -28.29292 -25.48864 -22.65580 -21.86757 -20.53932 -18.55141 -18.18637 -16.88131 -16.40862 -16.39979 -15.00038 -14.83335 -14.51693 -14.36172 -13.94802 -13.60245 -13.33549 -12.89982 -12.76375 -12.59297 -12.25588 -12.16981 -11.87554 -11.54829 -11.18784 -10.88313 -10.62966 -10.42687 -9.96280 -8.14803 -6.26559 1.37700 1.42335 1.49837 1.66351 2.41880 2.55580 3.17226 3.55032 3.68944 4.01217 4.26949 4.39064 4.54852 4.69686 4.81033 4.82996 4.93729 5.07671 5.25893 5.30800 5.44380 5.52922 5.61439 5.82672 5.90630 6.03261 6.11885 6.27714 6.92441 7.38118 7.41654 8.97252 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048551 B = 0.009937 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.579458 B = 2816.959169 C = 3092.459323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 H 0.058 0.942 4 C 0.025 3.975 5 C -0.531 4.531 6 H 0.068 0.932 7 C -0.010 4.010 8 N -0.939 5.939 9 Si 0.966 3.034 10 H -0.288 1.288 11 H -0.267 1.267 12 H -0.260 1.260 13 C -0.121 4.121 14 H 0.086 0.914 15 C -0.121 4.121 16 C 0.100 3.900 17 N -0.727 5.727 18 C 0.508 3.492 19 O -0.588 6.588 20 H 0.047 0.953 21 H 0.087 0.913 22 H 0.042 0.958 23 H -0.014 1.014 24 H -0.020 1.020 25 H 0.260 0.740 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 7.371 -15.341 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 H 0.076 0.924 4 C -0.012 4.012 5 C -0.569 4.569 6 H 0.086 0.914 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.790 3.210 10 H -0.213 1.213 11 H -0.192 1.192 12 H -0.185 1.185 13 C -0.143 4.143 14 H 0.104 0.896 15 C -0.159 4.159 16 C -0.023 4.023 17 N -0.382 5.382 18 C 0.295 3.705 19 O -0.468 6.468 20 H 0.066 0.934 21 H 0.106 0.894 22 H 0.062 0.938 23 H 0.004 0.996 24 H -0.002 1.002 25 H 0.068 0.932 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.098 0.902 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.372 6.904 -14.878 16.975 hybrid contribution 0.789 -0.085 1.238 1.471 sum -3.582 6.819 -13.640 15.665 Atomic orbital electron populations 1.21719 0.92997 1.01452 1.02059 1.20853 0.97321 0.97868 0.91810 0.92356 1.19100 0.94667 0.94197 0.93225 1.21670 1.34485 1.08696 0.92013 0.91410 1.26110 0.95287 0.96165 1.03139 1.70182 1.40275 1.23323 1.24152 0.85488 0.79192 0.78552 0.77726 1.21319 1.19185 1.18494 1.22087 0.91290 1.02433 0.98484 0.89608 1.22849 0.99242 0.99045 0.94721 1.22362 0.83242 0.96478 1.00220 1.46261 1.10804 1.39332 1.41810 1.21466 0.92359 0.78849 0.77828 1.90723 1.59720 1.48942 1.47380 0.93416 0.89393 0.93838 0.99610 1.00171 0.93154 0.88082 0.86634 0.86651 0.90158 0.74870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.77 71.98 0.63 -3.55 16 2 C -0.06 -2.41 1.92 -10.79 -0.02 -2.43 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.03 1.43 4.33 29.85 0.13 1.56 16 5 C -0.53 -31.35 8.41 25.60 0.22 -31.13 16 6 H 0.07 3.71 7.06 -2.91 -0.02 3.69 16 7 C -0.01 -0.62 5.46 84.66 0.46 -0.16 16 8 N -0.94 -61.85 13.29 21.45 0.28 -61.56 16 9 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 C -0.12 -4.11 2.51 -10.80 -0.03 -4.14 16 14 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 15 C -0.12 -2.34 6.53 31.65 0.21 -2.14 16 16 C 0.10 1.72 7.78 86.83 0.68 2.39 16 17 N -0.73 -19.52 6.24 -459.79 -2.87 -22.39 16 18 C 0.51 19.99 7.30 87.90 0.64 20.63 16 19 O -0.59 -30.74 16.62 -3.04 -0.05 -30.79 16 20 H 0.05 1.76 6.95 -2.39 -0.02 1.74 16 21 H 0.09 2.03 6.13 -2.39 -0.01 2.02 16 22 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 23 H -0.01 -0.96 6.30 -2.38 -0.02 -0.97 16 24 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 25 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.12 1.78 5.85 -2.39 -0.01 1.77 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.41 9.56 8.96 -92.71 -0.83 8.73 16 Total: -1.00 -81.70 246.55 2.61 -79.09 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.30 Total: 6.40 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 2.91 Total: -18.96 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.58 Total: -83.95 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.79 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -81.70 2.61 -79.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501318.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.666 kcal (2) G-P(sol) polarization free energy of solvation -81.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds