Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.52997 * 109.47341 * 239.99739 * 2 1 3 5 5 C 1.50704 * 109.47048 * 64.99731 * 4 2 1 6 6 H 1.08003 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00236 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00143 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47393 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47048 * 120.00511 * 9 7 5 12 12 H 1.48501 * 109.47381 * 240.00285 * 9 7 5 13 13 C 1.52998 * 109.47030 * 119.99883 * 2 1 3 14 14 H 1.09000 * 110.43799 * 58.91205 * 13 2 1 15 15 C 1.54628 * 110.48632 * 296.22983 * 13 2 1 16 16 C 1.54663 * 101.68539 * 216.30874 * 15 13 2 17 17 N 1.46766 * 105.38117 * 25.77156 * 16 15 13 18 18 C 1.34426 * 111.29916 * 342.58270 * 17 16 15 19 19 O 1.21278 * 124.94275 * 180.69504 * 18 17 16 20 20 H 1.09003 * 109.47203 * 60.00474 * 1 2 3 21 21 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47208 * 300.00013 * 1 2 3 23 23 H 1.08998 * 109.47269 * 184.99591 * 4 2 1 24 24 H 1.08998 * 109.47487 * 305.00506 * 4 2 1 25 25 H 0.97004 * 119.99958 * 179.97438 * 8 7 5 26 26 H 1.09002 * 110.97177 * 334.64102 * 15 13 2 27 27 H 1.08994 * 110.97175 * 98.37096 * 15 13 2 28 28 H 1.08999 * 110.40049 * 266.74034 * 16 15 13 29 29 H 1.09001 * 110.18102 * 144.67906 * 16 15 13 30 30 H 0.97001 * 124.35394 * 162.85956 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3758 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4984 0.5625 -5.2496 10 1 0.7410 1.7735 -4.8436 11 1 2.7162 0.9681 -5.9964 12 1 0.6451 -0.2873 -6.1185 13 6 2.0400 -0.7212 1.2492 14 1 1.6696 -1.7460 1.2749 15 6 1.6168 0.0423 2.5256 16 6 2.8486 -0.1651 3.4375 17 7 3.9772 -0.3807 2.5243 18 6 3.5522 -0.7035 1.2906 19 8 4.2757 -0.9457 0.3479 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 3.1264 -0.7994 -1.2055 24 1 1.6054 -1.7198 -1.2951 25 1 2.9238 -1.8417 -4.7317 26 1 1.4574 1.0994 2.3130 27 1 0.7263 -0.4030 2.9692 28 1 2.7070 -1.0379 4.0748 29 1 3.0200 0.7231 4.0457 30 1 4.9099 -0.3042 2.7793 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501320.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = -52.486291 kcal Electronic energy + Delta-G solvation = -12790.625326 eV Core-core repulsion = 10585.166859 eV Total energy + Delta-G solvation = -2205.458467 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.02180 -35.94855 -35.01162 -32.22448 -29.70288 -27.06697 -26.63902 -23.49706 -21.33204 -20.41808 -18.81838 -16.95310 -16.09340 -15.99717 -14.54727 -14.37039 -13.67399 -13.32899 -13.09072 -12.75512 -12.28655 -11.81031 -11.68380 -11.36896 -10.95359 -10.84185 -10.74556 -10.32204 -10.23494 -9.91729 -9.24749 -8.86398 -8.80744 -8.56130 -8.04578 -5.79971 -3.80430 3.17316 3.40582 3.47531 3.50999 3.68799 4.59122 4.72918 4.84087 5.00455 5.36555 5.54851 5.55964 5.70390 5.94798 5.99497 6.10958 6.26550 6.41381 6.53712 6.94262 7.10227 7.20747 7.31283 7.32987 7.92173 8.13069 8.34232 8.62556 8.81782 9.29646 9.80213 11.31275 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054663 B = 0.009651 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.111208 B = 2900.680963 C = 3227.849289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 H 0.056 0.944 4 C 0.006 3.994 5 C -0.511 4.511 6 H 0.052 0.948 7 C 0.054 3.946 8 N -0.892 5.892 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C -0.117 4.117 14 H 0.101 0.899 15 C -0.130 4.130 16 C 0.104 3.896 17 N -0.747 5.747 18 C 0.517 3.483 19 O -0.500 6.500 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.010 0.990 25 H 0.257 0.743 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 2.831 14.945 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.030 4.030 5 C -0.549 4.549 6 H 0.070 0.930 7 C -0.146 4.146 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.139 4.139 14 H 0.119 0.881 15 C -0.168 4.168 16 C -0.021 4.021 17 N -0.405 5.405 18 C 0.303 3.697 19 O -0.373 6.373 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.960 2.569 14.250 14.612 hybrid contribution 0.139 0.494 -0.678 0.850 sum -1.821 3.064 13.572 14.032 Atomic orbital electron populations 1.21737 0.95870 1.00932 1.00326 1.21091 0.95002 0.98740 0.93914 0.92536 1.19507 0.99602 0.94597 0.89330 1.21284 1.34259 1.08094 0.91292 0.92951 1.25005 0.95559 0.95150 0.98890 1.70011 1.39079 1.21228 1.22861 0.86645 0.78154 0.80107 0.83710 1.19915 1.21209 1.21221 1.22105 0.92661 1.02018 0.97101 0.88088 1.22740 0.97040 1.01890 0.95129 1.22011 0.86733 1.00811 0.92536 1.46328 1.08858 1.73584 1.11720 1.21058 0.91661 0.75202 0.81777 1.90786 1.61910 1.47382 1.37225 0.91729 0.93553 0.94936 0.92441 0.97172 0.93372 0.90041 0.89777 0.91750 0.91064 0.76003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.82 37.16 0.33 -2.08 16 2 C -0.07 -1.43 1.80 -90.62 -0.16 -1.60 16 3 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 4 C 0.01 0.18 4.27 -27.88 -0.12 0.06 16 5 C -0.51 -15.07 8.41 -34.44 -0.29 -15.36 16 6 H 0.05 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.05 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -28.50 13.29 55.43 0.74 -27.77 16 9 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C -0.12 -2.01 2.50 -90.63 -0.23 -2.24 16 14 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 15 C -0.13 -1.54 5.71 -25.00 -0.14 -1.68 16 16 C 0.10 1.05 7.79 -3.02 -0.02 1.03 16 17 N -0.75 -10.26 6.24 -59.10 -0.37 -10.63 16 18 C 0.52 9.85 7.83 -10.86 -0.08 9.77 16 19 O -0.50 -12.32 15.08 5.56 0.08 -12.24 16 20 H 0.06 1.30 6.95 -51.93 -0.36 0.93 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.03 0.47 7.39 -51.93 -0.38 0.09 16 23 H 0.06 1.76 5.19 -51.93 -0.27 1.49 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 26 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 4.76 8.96 -40.82 -0.37 4.40 16 LS Contribution 246.79 15.07 3.72 3.72 Total: -1.00 -35.04 246.79 -5.92 -40.96 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.25 Total: -1.11 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.82 Total: -10.55 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.37 Total: -38.40 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -35.04 -5.92 -40.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501320.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.526 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds