Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.52997 * 109.47341 * 239.99739 * 2 1 3 5 5 C 1.50704 * 109.47048 * 64.99731 * 4 2 1 6 6 H 1.08003 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00236 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99789 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00143 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47393 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47048 * 120.00511 * 9 7 5 12 12 H 1.48501 * 109.47381 * 240.00285 * 9 7 5 13 13 C 1.52998 * 109.47030 * 119.99883 * 2 1 3 14 14 H 1.09000 * 110.43799 * 58.91205 * 13 2 1 15 15 C 1.54628 * 110.48632 * 296.22983 * 13 2 1 16 16 C 1.54663 * 101.68539 * 216.30874 * 15 13 2 17 17 N 1.46766 * 105.38117 * 25.77156 * 16 15 13 18 18 C 1.34426 * 111.29916 * 342.58270 * 17 16 15 19 19 O 1.21278 * 124.94275 * 180.69504 * 18 17 16 20 20 H 1.09003 * 109.47203 * 60.00474 * 1 2 3 21 21 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47208 * 300.00013 * 1 2 3 23 23 H 1.08998 * 109.47269 * 184.99591 * 4 2 1 24 24 H 1.08998 * 109.47487 * 305.00506 * 4 2 1 25 25 H 0.97004 * 119.99958 * 179.97438 * 8 7 5 26 26 H 1.09002 * 110.97177 * 334.64102 * 15 13 2 27 27 H 1.08994 * 110.97175 * 98.37096 * 15 13 2 28 28 H 1.08999 * 110.40049 * 266.74034 * 16 15 13 29 29 H 1.09001 * 110.18102 * 144.67906 * 16 15 13 30 30 H 0.97001 * 124.35394 * 162.85956 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3758 7 6 1.9933 -0.4018 -3.7282 8 7 2.6765 -1.5188 -3.8511 9 14 1.4984 0.5625 -5.2496 10 1 0.7410 1.7735 -4.8436 11 1 2.7162 0.9681 -5.9964 12 1 0.6451 -0.2873 -6.1185 13 6 2.0400 -0.7212 1.2492 14 1 1.6696 -1.7460 1.2749 15 6 1.6168 0.0423 2.5256 16 6 2.8486 -0.1651 3.4375 17 7 3.9772 -0.3807 2.5243 18 6 3.5522 -0.7035 1.2906 19 8 4.2757 -0.9457 0.3479 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 3.1264 -0.7994 -1.2055 24 1 1.6054 -1.7198 -1.2951 25 1 2.9238 -1.8417 -4.7317 26 1 1.4574 1.0994 2.3130 27 1 0.7263 -0.4030 2.9692 28 1 2.7070 -1.0379 4.0748 29 1 3.0200 0.7231 4.0457 30 1 4.9099 -0.3042 2.7793 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501320.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = -79.275401 kcal Electronic energy + Delta-G solvation = -12791.786989 eV Core-core repulsion = 10585.166859 eV Total energy + Delta-G solvation = -2206.620130 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37168 -37.43823 -36.67304 -34.35131 -31.09085 -28.77565 -28.12713 -25.41489 -22.49164 -22.02339 -20.36905 -18.46882 -18.10183 -17.32997 -16.52340 -15.86056 -15.07621 -14.70456 -14.55631 -14.50738 -13.59562 -13.54766 -13.16369 -13.02465 -12.72556 -12.67336 -12.20715 -12.06927 -11.93304 -11.68568 -11.17527 -10.78646 -10.62032 -10.15833 -9.91619 -8.11601 -6.21021 1.37073 1.39176 1.51693 1.70916 2.43292 2.56883 3.20519 3.59115 3.73784 3.97699 4.33162 4.42459 4.55627 4.72820 4.82770 4.86188 4.96406 5.15214 5.26548 5.32826 5.45701 5.52462 5.67652 5.91788 5.95332 6.09405 6.24542 6.34466 6.99401 7.45144 7.45370 9.00853 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054663 B = 0.009651 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.111208 B = 2900.680963 C = 3227.849289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 H 0.047 0.953 4 C 0.009 3.991 5 C -0.526 4.526 6 H 0.061 0.939 7 C -0.011 4.011 8 N -0.938 5.938 9 Si 0.964 3.036 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.277 1.277 13 C -0.120 4.120 14 H 0.100 0.900 15 C -0.118 4.118 16 C 0.102 3.898 17 N -0.730 5.730 18 C 0.501 3.499 19 O -0.575 6.575 20 H 0.041 0.959 21 H 0.044 0.956 22 H 0.081 0.919 23 H 0.019 0.981 24 H -0.024 1.024 25 H 0.258 0.742 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 4.428 17.077 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 H 0.066 0.934 4 C -0.028 4.028 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.788 3.212 10 H -0.181 1.181 11 H -0.210 1.210 12 H -0.203 1.203 13 C -0.141 4.141 14 H 0.118 0.882 15 C -0.156 4.156 16 C -0.021 4.021 17 N -0.386 5.386 18 C 0.288 3.712 19 O -0.454 6.454 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.099 0.901 23 H 0.037 0.963 24 H -0.005 1.005 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.625 4.195 16.466 17.374 hybrid contribution 0.684 -0.024 -1.252 1.427 sum -2.941 4.171 15.214 16.047 Atomic orbital electron populations 1.21649 0.93470 1.01298 1.01606 1.20891 0.96914 0.97558 0.92758 0.93410 1.19367 0.97206 0.93613 0.92602 1.21753 1.33884 1.08396 0.92401 0.92098 1.26056 0.95502 0.96263 1.02939 1.70187 1.40607 1.23330 1.23803 0.85424 0.77937 0.78951 0.78875 1.18139 1.20953 1.20268 1.22056 0.91448 1.02471 0.98143 0.88221 1.22804 0.99149 1.01571 0.92030 1.22392 0.84156 1.03802 0.91776 1.46322 1.10674 1.70989 1.10581 1.21550 0.92481 0.74702 0.82427 1.90747 1.63531 1.50985 1.40102 0.93943 0.93644 0.90055 0.96300 1.00513 0.93293 0.89415 0.86295 0.88949 0.87447 0.74930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.82 71.98 0.63 -3.67 16 2 C -0.06 -2.61 1.80 -10.80 -0.02 -2.63 16 3 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 4 C 0.01 0.52 4.27 29.85 0.13 0.65 16 5 C -0.53 -31.99 8.41 25.60 0.22 -31.77 16 6 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 7 C -0.01 -0.70 5.46 84.65 0.46 -0.24 16 8 N -0.94 -62.50 13.29 21.45 0.28 -62.21 16 9 Si 0.96 47.32 29.54 68.60 2.03 49.35 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C -0.12 -3.98 2.50 -10.80 -0.03 -4.01 16 14 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 15 C -0.12 -2.26 5.71 31.72 0.18 -2.08 16 16 C 0.10 1.57 7.79 86.90 0.68 2.25 16 17 N -0.73 -18.63 6.24 -459.48 -2.87 -21.50 16 18 C 0.50 19.37 7.83 87.90 0.69 20.06 16 19 O -0.57 -30.18 15.08 -3.02 -0.05 -30.23 16 20 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 21 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 22 H 0.08 2.05 7.39 -2.39 -0.02 2.04 16 23 H 0.02 1.24 5.19 -2.39 -0.01 1.23 16 24 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 25 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 26 H 0.09 1.63 7.90 -2.39 -0.02 1.61 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.41 9.07 8.96 -92.71 -0.83 8.24 16 Total: -1.00 -82.71 246.79 2.64 -80.07 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.30 Total: 5.96 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 2.94 Total: -21.45 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.58 Total: -83.71 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.23 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.71 2.64 -80.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501320.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.799 kcal (2) G-P(sol) polarization free energy of solvation -82.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds