Wall clock time and date at job start Mon Mar 30 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.53001 * 109.47256 * 120.00022 * 2 1 3 5 5 C 1.50697 * 109.46995 * 295.00320 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.52998 * 109.47175 * 240.00571 * 2 1 3 14 14 H 1.09005 * 110.43147 * 300.70085 * 13 2 1 15 15 C 1.54630 * 110.48597 * 178.15985 * 13 2 1 16 16 C 1.54481 * 101.75950 * 216.51966 * 15 13 2 17 17 N 1.46761 * 105.47659 * 25.41805 * 16 15 13 18 18 C 1.34649 * 111.33427 * 342.86300 * 17 16 15 19 19 O 1.21283 * 125.07356 * 180.52107 * 18 17 16 20 20 H 1.08996 * 109.47368 * 59.99901 * 1 2 3 21 21 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 23 23 H 1.08998 * 109.47065 * 174.99746 * 4 2 1 24 24 H 1.09001 * 109.46892 * 55.00010 * 4 2 1 25 25 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 26 26 H 1.08995 * 110.96521 * 334.63957 * 15 13 2 27 27 H 1.08999 * 110.96712 * 98.36545 * 15 13 2 28 28 H 1.09003 * 110.24085 * 144.42092 * 16 15 13 29 29 H 1.08997 * 110.24871 * 266.32427 * 16 15 13 30 30 H 0.97001 * 124.34735 * 162.98653 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0842 0.9766 2.3755 7 6 1.9924 -0.4024 3.7283 8 7 2.6704 -1.5225 3.8514 9 14 1.5048 0.5663 5.2493 10 1 0.1760 0.1048 5.7252 11 1 2.5146 0.3526 6.3169 12 1 1.4362 2.0115 4.9148 13 6 2.0400 -0.7211 -1.2493 14 1 1.6751 -1.7480 -1.2715 15 6 3.5853 -0.6946 -1.2965 16 6 3.8514 -0.5343 -2.8097 17 7 2.6522 0.1154 -3.3515 18 6 1.6149 0.0188 -2.4984 19 8 0.5035 0.4605 -2.6998 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1263 -0.7995 1.2055 24 1 1.6054 -1.7198 1.2951 25 1 2.9170 -1.8458 4.7321 26 1 3.9780 0.1557 -0.7390 27 1 4.0030 -1.6297 -0.9233 28 1 4.7274 0.0933 -2.9742 29 1 3.9952 -1.5104 -3.2730 30 1 2.6112 0.5564 -4.2145 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501325.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:06 Heat of formation + Delta-G solvation = -58.050360 kcal Electronic energy + Delta-G solvation = -12713.143456 eV Core-core repulsion = 10507.443713 eV Total energy + Delta-G solvation = -2205.699743 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11532 -36.11765 -35.06252 -32.30294 -29.75068 -27.35278 -26.41873 -23.42400 -21.59666 -20.34588 -18.87191 -17.11388 -16.29664 -15.99805 -14.51185 -14.43913 -13.68977 -13.42213 -13.05089 -12.90113 -12.24746 -12.09102 -11.71989 -11.29651 -10.88279 -10.80304 -10.63885 -10.42513 -10.13344 -9.73636 -9.66428 -8.97575 -8.94497 -8.68619 -8.30910 -5.96894 -3.97254 2.94314 3.34541 3.40746 3.44533 3.57982 4.49222 4.75470 4.87043 5.09264 5.37879 5.39436 5.59466 5.71676 6.04483 6.17754 6.30268 6.47906 6.51326 6.77340 7.02359 7.06756 7.11227 7.24488 7.37469 7.70245 7.85534 8.03459 8.47818 8.56653 9.08738 9.65975 11.14498 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056044 B = 0.008955 C = 0.008136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.484103 B = 3126.082104 C = 3440.760289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 H 0.056 0.944 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.117 4.117 14 H 0.102 0.898 15 C -0.126 4.126 16 C 0.101 3.899 17 N -0.742 5.742 18 C 0.522 3.478 19 O -0.530 6.530 20 H 0.060 0.940 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.019 0.981 24 H 0.017 0.983 25 H 0.259 0.741 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 0.749 -11.294 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.008 4.008 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.139 4.139 14 H 0.120 0.880 15 C -0.164 4.164 16 C -0.024 4.024 17 N -0.398 5.398 18 C 0.310 3.690 19 O -0.407 6.407 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.959 0.805 -11.145 11.560 hybrid contribution -0.080 0.558 0.533 0.776 sum 2.879 1.363 -10.612 11.080 Atomic orbital electron populations 1.21910 0.95572 1.01100 1.01739 1.21087 0.96033 0.98548 0.92823 0.92530 1.19176 0.96195 0.95454 0.90022 1.21254 1.34644 1.08200 0.91011 0.92600 1.25000 0.95333 0.95119 0.99027 1.69959 1.39327 1.21070 1.23329 0.86640 0.78214 0.80493 0.82945 1.20734 1.21328 1.19932 1.22125 0.96007 1.01202 0.94542 0.88000 1.22679 0.95468 1.04526 0.93694 1.22087 0.87540 0.97397 0.95327 1.46357 1.12941 1.59182 1.21322 1.21294 0.83704 0.78365 0.85645 1.90644 1.21402 1.50084 1.78543 0.92079 0.94107 0.92394 0.96286 0.96513 0.93136 0.89533 0.89110 0.90798 0.91563 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.73 37.16 0.32 -2.78 16 2 C -0.07 -1.38 1.80 -90.62 -0.16 -1.55 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.03 0.71 4.33 -27.88 -0.12 0.59 16 5 C -0.51 -14.33 8.40 -34.44 -0.29 -14.62 16 6 H 0.06 1.55 7.07 -52.49 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C -0.12 -2.01 2.50 -90.63 -0.23 -2.24 16 14 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 15 C -0.13 -1.76 5.55 -25.10 -0.14 -1.90 16 16 C 0.10 1.08 7.78 -3.12 -0.02 1.06 16 17 N -0.74 -9.49 6.25 -59.15 -0.37 -9.86 16 18 C 0.52 8.91 7.85 -10.76 -0.08 8.83 16 19 O -0.53 -10.81 15.25 5.55 0.08 -10.72 16 20 H 0.06 1.28 5.52 -51.93 -0.29 0.99 16 21 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 1.28 6.96 -51.93 -0.36 0.92 16 23 H 0.02 0.48 7.13 -51.93 -0.37 0.11 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.09 1.29 7.86 -51.93 -0.41 0.88 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.40 4.26 8.96 -40.82 -0.37 3.89 16 LS Contribution 246.83 15.07 3.72 3.72 Total: -1.00 -31.71 246.83 -5.93 -37.64 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.26 Total: -0.55 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.82 Total: -11.11 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.37 Total: -35.68 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.71 -5.93 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501325.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.411 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds