Wall clock time and date at job start Mon Mar 30 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.53001 * 109.47256 * 120.00022 * 2 1 3 5 5 C 1.50697 * 109.46995 * 295.00320 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 C 1.52998 * 109.47175 * 240.00571 * 2 1 3 14 14 H 1.09005 * 110.43147 * 300.70085 * 13 2 1 15 15 C 1.54630 * 110.48597 * 178.15985 * 13 2 1 16 16 C 1.54481 * 101.75950 * 216.51966 * 15 13 2 17 17 N 1.46761 * 105.47659 * 25.41805 * 16 15 13 18 18 C 1.34649 * 111.33427 * 342.86300 * 17 16 15 19 19 O 1.21283 * 125.07356 * 180.52107 * 18 17 16 20 20 H 1.08996 * 109.47368 * 59.99901 * 1 2 3 21 21 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 23 23 H 1.08998 * 109.47065 * 174.99746 * 4 2 1 24 24 H 1.09001 * 109.46892 * 55.00010 * 4 2 1 25 25 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 26 26 H 1.08995 * 110.96521 * 334.63957 * 15 13 2 27 27 H 1.08999 * 110.96712 * 98.36545 * 15 13 2 28 28 H 1.09003 * 110.24085 * 144.42092 * 16 15 13 29 29 H 1.08997 * 110.24871 * 266.32427 * 16 15 13 30 30 H 0.97001 * 124.34735 * 162.98653 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 1 1.0842 0.9766 2.3755 7 6 1.9924 -0.4024 3.7283 8 7 2.6704 -1.5225 3.8514 9 14 1.5048 0.5663 5.2493 10 1 0.1760 0.1048 5.7252 11 1 2.5146 0.3526 6.3169 12 1 1.4362 2.0115 4.9148 13 6 2.0400 -0.7211 -1.2493 14 1 1.6751 -1.7480 -1.2715 15 6 3.5853 -0.6946 -1.2965 16 6 3.8514 -0.5343 -2.8097 17 7 2.6522 0.1154 -3.3515 18 6 1.6149 0.0188 -2.4984 19 8 0.5035 0.4605 -2.6998 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1263 -0.7995 1.2055 24 1 1.6054 -1.7198 1.2951 25 1 2.9170 -1.8458 4.7321 26 1 3.9780 0.1557 -0.7390 27 1 4.0030 -1.6297 -0.9233 28 1 4.7274 0.0933 -2.9742 29 1 3.9952 -1.5104 -3.2730 30 1 2.6112 0.5564 -4.2145 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501325.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:06 Heat of formation + Delta-G solvation = -80.234982 kcal Electronic energy + Delta-G solvation = -12714.105453 eV Core-core repulsion = 10507.443713 eV Total energy + Delta-G solvation = -2206.661740 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.40738 -37.51373 -36.68427 -34.33960 -31.10813 -29.13203 -27.87469 -25.41514 -22.76204 -21.87507 -20.41510 -18.50528 -18.19218 -17.37302 -16.41743 -15.82726 -15.08556 -14.72288 -14.60658 -14.48439 -14.05321 -13.54982 -13.26987 -13.02468 -12.71828 -12.60054 -12.31661 -12.02143 -11.80634 -11.52026 -11.43192 -10.96942 -10.49974 -10.33979 -9.97503 -8.15151 -6.22540 1.41010 1.41621 1.52257 1.61199 2.43159 2.51856 3.18362 3.53054 3.71714 3.91727 4.23526 4.38533 4.51058 4.72163 4.80788 4.83647 4.99552 5.12939 5.23869 5.29674 5.41989 5.47436 5.58696 5.82457 5.89448 5.96429 6.10189 6.34144 6.91879 7.34575 7.44691 8.96161 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056044 B = 0.008955 C = 0.008136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.484103 B = 3126.082104 C = 3440.760289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.058 4.058 3 H 0.047 0.953 4 C 0.038 3.962 5 C -0.533 4.533 6 H 0.052 0.948 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.268 1.268 13 C -0.120 4.120 14 H 0.103 0.897 15 C -0.126 4.126 16 C 0.107 3.893 17 N -0.723 5.723 18 C 0.519 3.481 19 O -0.571 6.571 20 H 0.065 0.935 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.011 0.989 24 H -0.008 1.008 25 H 0.262 0.738 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 1.098 -12.118 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 H 0.066 0.934 4 C 0.001 3.999 5 C -0.571 4.571 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.192 1.192 13 C -0.142 4.142 14 H 0.121 0.879 15 C -0.164 4.164 16 C -0.016 4.016 17 N -0.379 5.379 18 C 0.306 3.694 19 O -0.451 6.451 20 H 0.084 0.916 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.945 1.158 -12.002 12.687 hybrid contribution -0.342 0.423 0.773 0.945 sum 3.603 1.580 -11.230 11.899 Atomic orbital electron populations 1.21834 0.95914 1.00818 1.01057 1.20870 0.95683 0.97959 0.93215 0.93411 1.19015 0.95448 0.94208 0.91195 1.21636 1.34587 1.08392 0.92466 0.92971 1.25818 0.95307 0.96106 1.02160 1.70064 1.40248 1.22420 1.24201 0.85613 0.78012 0.79264 0.79167 1.20240 1.20568 1.19227 1.22027 0.98439 1.00692 0.93010 0.87892 1.22678 0.92703 1.04493 0.96483 1.22273 0.87346 0.99469 0.92499 1.46247 1.12361 1.58042 1.21210 1.21177 0.83886 0.78215 0.86155 1.90618 1.23163 1.51915 1.79376 0.91620 0.94178 0.94056 0.97072 0.98947 0.92908 0.90731 0.88380 0.87601 0.88715 0.74331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.73 71.98 0.63 -5.38 16 2 C -0.06 -2.47 1.80 -10.79 -0.02 -2.49 16 3 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.04 1.96 4.33 29.85 0.13 2.09 16 5 C -0.53 -30.18 8.40 25.60 0.22 -29.96 16 6 H 0.05 2.93 7.07 -2.92 -0.02 2.91 16 7 C 0.00 0.22 5.46 84.66 0.46 0.68 16 8 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 9 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C -0.12 -4.04 2.50 -10.80 -0.03 -4.06 16 14 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 15 C -0.13 -3.28 5.55 31.65 0.18 -3.10 16 16 C 0.11 1.87 7.78 86.83 0.68 2.55 16 17 N -0.72 -16.33 6.25 -459.50 -2.87 -19.20 16 18 C 0.52 16.99 7.85 87.86 0.69 17.68 16 19 O -0.57 -22.97 15.25 -3.04 -0.05 -23.02 16 20 H 0.07 2.79 5.52 -2.39 -0.01 2.78 16 21 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.04 1.86 6.96 -2.38 -0.02 1.85 16 23 H 0.01 0.57 7.13 -2.39 -0.02 0.55 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.42 7.44 8.96 -92.71 -0.83 6.61 16 Total: -1.00 -68.36 246.83 2.62 -65.74 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.30 Total: 6.96 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 2.93 Total: -22.01 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.59 Total: -74.31 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.36 2.62 -65.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501325.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.495 kcal (2) G-P(sol) polarization free energy of solvation -68.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds