Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46901 * 2 1 4 4 C 1.52993 * 109.46935 * 239.99802 * 2 1 3 5 5 C 1.50696 * 109.47432 * 64.99939 * 4 2 1 6 6 H 1.07999 * 119.99822 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00126 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 0.27447 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 C 1.52998 * 109.46777 * 119.99655 * 2 1 3 14 14 H 1.09005 * 110.21351 * 178.07320 * 13 2 1 15 15 C 1.54476 * 110.24994 * 299.99752 * 13 2 1 16 16 C 1.54630 * 101.76264 * 93.58881 * 15 13 2 17 17 C 1.51283 * 104.19731 * 24.79831 * 16 15 13 18 18 O 1.21275 * 124.94064 * 163.70758 * 17 16 15 19 19 N 1.34418 * 110.11285 * 343.74763 * 17 16 15 20 20 H 1.08997 * 109.47105 * 60.00139 * 1 2 3 21 21 H 1.09005 * 109.47024 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47482 * 300.00054 * 1 2 3 23 23 H 1.08996 * 109.47340 * 304.99523 * 4 2 1 24 24 H 1.09004 * 109.46672 * 185.00286 * 4 2 1 25 25 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 26 26 H 1.09000 * 110.97469 * 211.70783 * 15 13 2 27 27 H 1.09000 * 110.97053 * 335.43839 * 15 13 2 28 28 H 1.08998 * 110.49052 * 143.47927 * 16 15 13 29 29 H 1.09007 * 110.48590 * 266.11886 * 16 15 13 30 30 H 0.96994 * 124.35052 * 179.58813 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 1 1.0799 0.9740 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 1.6457 0.2775 -4.7993 9 14 2.9575 -1.9922 -3.9030 10 1 4.4122 -1.6939 -3.8824 11 1 2.6226 -2.9005 -2.7770 12 1 2.6046 -2.6464 -5.1886 13 6 2.0400 -0.7212 1.2493 14 1 3.1294 -0.7582 1.2446 15 6 1.5350 -0.0069 2.5225 16 6 0.2434 -0.7971 2.8360 17 6 0.4700 -2.1482 2.1942 18 8 -0.1699 -3.1491 2.4381 19 7 1.4842 -2.0779 1.3149 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6054 -1.7198 -1.2950 24 1 3.1263 -0.7995 -1.2054 25 1 1.8936 -0.0451 -5.6799 26 1 2.2562 -0.1004 3.3344 27 1 1.3124 1.0407 2.3198 28 1 0.1130 -0.9034 3.9129 29 1 -0.6223 -0.3046 2.3929 30 1 1.8074 -2.8276 0.7911 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -53.017463 kcal Electronic energy + Delta-G solvation = -12868.028295 eV Core-core repulsion = 10662.546795 eV Total energy + Delta-G solvation = -2205.481500 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.38153 -36.93308 -33.85072 -31.85452 -31.18996 -27.62253 -27.13445 -23.40833 -21.30393 -20.44960 -19.03934 -17.06457 -16.89962 -15.81600 -14.98039 -14.38277 -13.82395 -13.66771 -13.15122 -12.76829 -12.53484 -12.29446 -12.00290 -11.60621 -11.37699 -10.97866 -10.75271 -10.60022 -10.06856 -9.80511 -9.66774 -9.54755 -9.20336 -8.64202 -8.56335 -6.07691 -4.05352 2.86136 3.26662 3.35512 3.37046 3.69763 4.41341 4.56538 4.66473 4.97179 5.24590 5.25818 5.54722 5.60134 5.73406 5.89782 5.91784 6.03614 6.22291 6.33249 6.64852 6.82072 6.98709 7.10109 7.14521 7.33491 7.38061 7.75191 8.49651 8.52775 8.97085 9.54831 11.05584 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049511 B = 0.010149 C = 0.009411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.393809 B = 2758.331916 C = 2974.665535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.009 4.009 5 C -0.516 4.516 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.288 1.288 13 C 0.128 3.872 14 H 0.084 0.916 15 C -0.127 4.127 16 C -0.159 4.159 17 C 0.520 3.480 18 O -0.553 6.553 19 N -0.716 5.716 20 H 0.068 0.932 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.016 0.984 24 H 0.010 0.990 25 H 0.263 0.737 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -0.229 13.124 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.046 4.046 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C 0.023 3.977 14 H 0.103 0.897 15 C -0.165 4.165 16 C -0.199 4.199 17 C 0.307 3.693 18 O -0.431 6.431 19 N -0.370 5.370 20 H 0.087 0.913 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.033 -0.652 13.122 13.179 hybrid contribution 0.735 -1.085 -0.687 1.480 sum 1.768 -1.737 12.435 12.680 Atomic orbital electron populations 1.21886 0.95687 1.01092 1.01031 1.21451 0.96133 0.99472 0.93700 0.90523 1.19606 0.95372 0.96265 0.93359 1.21104 1.35584 1.09582 0.89095 0.90826 1.25037 0.95675 0.96867 0.95985 1.69911 1.46953 1.39288 0.98060 0.86801 0.80492 0.84466 0.77591 1.20392 1.19174 1.21454 1.21950 0.98291 0.81522 0.95919 0.89748 1.22640 0.96358 1.00441 0.97088 1.22481 1.00441 0.94728 1.02272 1.20844 0.79102 0.90089 0.79293 1.90710 1.50584 1.36191 1.65640 1.46282 1.35573 1.12467 1.42634 0.91316 0.93678 0.94155 0.96610 0.97177 0.92762 0.90564 0.89039 0.88871 0.87358 0.75268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.63 37.16 0.28 -2.15 16 2 C -0.09 -1.54 2.11 -90.62 -0.19 -1.73 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.01 -0.19 3.34 -27.89 -0.09 -0.29 16 5 C -0.52 -14.01 8.96 -34.44 -0.31 -14.32 16 6 H 0.07 2.15 7.30 -52.49 -0.38 1.76 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.13 1.78 3.46 -67.01 -0.23 1.55 16 14 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.13 -1.37 6.22 -25.10 -0.16 -1.53 16 16 C -0.16 -1.92 6.06 -26.74 -0.16 -2.08 16 17 C 0.52 8.37 7.32 -10.86 -0.08 8.29 16 18 O -0.55 -11.01 18.03 5.56 0.10 -10.91 16 19 N -0.72 -10.90 4.92 -52.77 -0.26 -11.16 16 20 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 21 H 0.04 0.83 6.90 -51.93 -0.36 0.47 16 22 H 0.04 0.57 5.28 -51.93 -0.27 0.29 16 23 H 0.02 0.36 6.87 -51.93 -0.36 0.00 16 24 H 0.01 0.22 7.58 -51.93 -0.39 -0.18 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 1.27 6.07 -51.92 -0.32 0.96 16 30 H 0.41 6.24 8.88 -40.82 -0.36 5.88 16 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -31.89 240.07 -5.54 -37.43 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.06 Total: 1.44 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.04 Total: -10.48 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.51 Total: -37.82 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.10 Total: -10.91 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.89 -5.54 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.592 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds