Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46901 * 2 1 4 4 C 1.52993 * 109.46935 * 239.99802 * 2 1 3 5 5 C 1.50696 * 109.47432 * 64.99939 * 4 2 1 6 6 H 1.07999 * 119.99822 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00126 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 0.27447 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 C 1.52998 * 109.46777 * 119.99655 * 2 1 3 14 14 H 1.09005 * 110.21351 * 178.07320 * 13 2 1 15 15 C 1.54476 * 110.24994 * 299.99752 * 13 2 1 16 16 C 1.54630 * 101.76264 * 93.58881 * 15 13 2 17 17 C 1.51283 * 104.19731 * 24.79831 * 16 15 13 18 18 O 1.21275 * 124.94064 * 163.70758 * 17 16 15 19 19 N 1.34418 * 110.11285 * 343.74763 * 17 16 15 20 20 H 1.08997 * 109.47105 * 60.00139 * 1 2 3 21 21 H 1.09005 * 109.47024 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47482 * 300.00054 * 1 2 3 23 23 H 1.08996 * 109.47340 * 304.99523 * 4 2 1 24 24 H 1.09004 * 109.46672 * 185.00286 * 4 2 1 25 25 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 26 26 H 1.09000 * 110.97469 * 211.70783 * 15 13 2 27 27 H 1.09000 * 110.97053 * 335.43839 * 15 13 2 28 28 H 1.08998 * 110.49052 * 143.47927 * 16 15 13 29 29 H 1.09007 * 110.48590 * 266.11886 * 16 15 13 30 30 H 0.96994 * 124.35052 * 179.58813 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 1 1.0799 0.9740 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 1.6457 0.2775 -4.7993 9 14 2.9575 -1.9922 -3.9030 10 1 4.4122 -1.6939 -3.8824 11 1 2.6226 -2.9005 -2.7770 12 1 2.6046 -2.6464 -5.1886 13 6 2.0400 -0.7212 1.2493 14 1 3.1294 -0.7582 1.2446 15 6 1.5350 -0.0069 2.5225 16 6 0.2434 -0.7971 2.8360 17 6 0.4700 -2.1482 2.1942 18 8 -0.1699 -3.1491 2.4381 19 7 1.4842 -2.0779 1.3149 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6054 -1.7198 -1.2950 24 1 3.1263 -0.7995 -1.2054 25 1 1.8936 -0.0451 -5.6799 26 1 2.2562 -0.1004 3.3344 27 1 1.3124 1.0407 2.3198 28 1 0.1130 -0.9034 3.9129 29 1 -0.6223 -0.3046 2.3929 30 1 1.8074 -2.8276 0.7911 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504000.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -76.149860 kcal Electronic energy + Delta-G solvation = -12869.031391 eV Core-core repulsion = 10662.546795 eV Total energy + Delta-G solvation = -2206.484596 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.56180 -38.29019 -35.58025 -33.73415 -32.24453 -29.37084 -28.37599 -25.04014 -22.64790 -21.62683 -20.41945 -19.00461 -18.18552 -17.07396 -16.42055 -16.12375 -15.22811 -15.10411 -14.54309 -14.42096 -13.97356 -13.60381 -13.37915 -12.91820 -12.77411 -12.63355 -12.32083 -11.87879 -11.76787 -11.54000 -11.20564 -11.07812 -10.84354 -10.73855 -9.91188 -8.26723 -6.28171 1.33359 1.36765 1.46283 1.64897 2.35904 2.55357 3.09342 3.51015 3.71486 4.01967 4.23921 4.33194 4.37478 4.58473 4.77084 4.89706 4.94974 5.04799 5.11474 5.23135 5.36668 5.38615 5.52434 5.63944 5.73439 5.96498 6.16429 6.33500 6.80429 7.31079 7.35437 8.89840 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049511 B = 0.010149 C = 0.009411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.393809 B = 2758.331916 C = 2974.665535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.516 4.516 6 H 0.038 0.962 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.264 1.264 11 H -0.250 1.250 12 H -0.292 1.292 13 C 0.130 3.870 14 H 0.104 0.896 15 C -0.114 4.114 16 C -0.154 4.154 17 C 0.510 3.490 18 O -0.600 6.600 19 N -0.718 5.718 20 H 0.032 0.968 21 H 0.029 0.971 22 H 0.078 0.922 23 H 0.009 0.991 24 H 0.021 0.979 25 H 0.263 0.737 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -0.384 15.367 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.045 4.045 5 C -0.554 4.554 6 H 0.056 0.944 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.189 1.189 11 H -0.174 1.174 12 H -0.219 1.219 13 C 0.026 3.974 14 H 0.122 0.878 15 C -0.152 4.152 16 C -0.193 4.193 17 C 0.298 3.702 18 O -0.482 6.482 19 N -0.369 5.369 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.272 -0.783 15.385 15.572 hybrid contribution 0.306 -0.967 -1.408 1.735 sum 2.578 -1.750 13.978 14.321 Atomic orbital electron populations 1.21821 0.95999 1.00093 1.01172 1.21399 0.95829 0.99746 0.93519 0.89938 1.19578 0.95956 0.95554 0.93417 1.21506 1.33996 1.08662 0.91213 0.94361 1.25989 0.97222 1.00665 0.95765 1.70072 1.49214 1.41586 0.98689 0.85734 0.79428 0.80158 0.77726 1.18945 1.17372 1.21883 1.22000 0.99301 0.80594 0.95543 0.87777 1.22696 0.95948 1.00604 0.95933 1.22528 1.01315 0.92135 1.03366 1.21587 0.78411 0.91005 0.79148 1.90681 1.52102 1.38269 1.67172 1.46454 1.35382 1.12975 1.42125 0.94859 0.95176 0.90332 0.97270 0.96061 0.92837 0.87635 0.87258 0.86565 0.86993 0.75755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.63 71.98 0.55 -3.96 16 2 C -0.09 -2.80 2.11 -10.80 -0.02 -2.82 16 3 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.01 -0.33 3.34 29.84 0.10 -0.23 16 5 C -0.52 -28.42 8.96 25.60 0.23 -28.19 16 6 H 0.04 2.32 7.30 -2.91 -0.02 2.29 16 7 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 8 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 9 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.25 -10.83 6.53 99.48 0.65 -10.18 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 C 0.13 3.13 3.46 45.44 0.16 3.29 16 14 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 15 C -0.11 -1.88 6.22 31.65 0.20 -1.69 16 16 C -0.15 -3.12 6.06 30.59 0.19 -2.93 16 17 C 0.51 15.37 7.32 87.90 0.64 16.01 16 18 O -0.60 -23.49 18.03 -3.01 -0.05 -23.54 16 19 N -0.72 -20.19 4.92 -439.45 -2.16 -22.35 16 20 H 0.03 1.33 6.95 -2.39 -0.02 1.31 16 21 H 0.03 1.08 6.90 -2.38 -0.02 1.06 16 22 H 0.08 2.01 5.28 -2.39 -0.01 2.00 16 23 H 0.01 0.40 6.87 -2.39 -0.02 0.39 16 24 H 0.02 0.87 7.58 -2.39 -0.02 0.85 16 25 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.11 1.50 7.69 -2.39 -0.02 1.49 16 28 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 2.21 6.07 -2.38 -0.01 2.20 16 30 H 0.40 11.69 8.88 -92.71 -0.82 10.87 16 Total: -1.00 -71.29 240.07 2.72 -68.57 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.26 Total: 10.82 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 2.50 Total: -20.08 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.86 Total: -81.67 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -71.29 2.72 -68.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504000.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.580 kcal (2) G-P(sol) polarization free energy of solvation -71.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds