Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47015 * 2 1 4 4 C 1.53003 * 109.46937 * 119.99710 * 2 1 3 5 5 C 1.50700 * 109.47121 * 295.00068 * 4 2 1 6 6 H 1.07997 * 120.00335 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47475 * 89.99303 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99678 * 9 7 5 12 12 H 1.48504 * 109.46794 * 329.99318 * 9 7 5 13 13 C 1.52997 * 109.46942 * 239.99478 * 2 1 3 14 14 H 1.09002 * 110.21843 * 299.30297 * 13 2 1 15 15 C 1.54481 * 110.24345 * 61.23347 * 13 2 1 16 16 C 1.54626 * 101.76755 * 93.67063 * 15 13 2 17 17 C 1.51284 * 104.19401 * 24.79412 * 16 15 13 18 18 O 1.21281 * 124.94178 * 163.70924 * 17 16 15 19 19 N 1.34419 * 110.11783 * 343.74834 * 17 16 15 20 20 H 1.08993 * 109.47495 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46962 * 300.00640 * 1 2 3 22 22 H 1.09001 * 109.46943 * 59.99989 * 1 2 3 23 23 H 1.09005 * 109.47120 * 55.00000 * 4 2 1 24 24 H 1.08998 * 109.47219 * 174.99968 * 4 2 1 25 25 H 0.97004 * 120.00251 * 180.02562 * 8 7 5 26 26 H 1.09001 * 110.96540 * 211.78740 * 15 13 2 27 27 H 1.08999 * 110.97248 * 335.51282 * 15 13 2 28 28 H 1.08993 * 110.48632 * 143.47216 * 16 15 13 29 29 H 1.09000 * 110.48434 * 266.12082 * 16 15 13 30 30 H 0.96999 * 124.34694 * 179.58471 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6763 -1.5186 3.8512 9 14 1.4984 0.5628 5.2497 10 1 0.1714 0.0937 5.7233 11 1 2.5078 0.3535 6.3185 12 1 1.4225 2.0080 4.9166 13 6 2.0400 -0.7214 -1.2492 14 1 1.6935 -1.7548 -1.2552 15 6 1.5605 0.0106 -2.5223 16 6 2.7566 0.9447 -2.8184 17 6 3.9361 0.2540 -2.1697 18 8 5.1002 0.5034 -2.4010 19 7 3.5060 -0.6768 -1.3005 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2953 24 1 3.1263 -0.7995 1.2057 25 1 2.9236 -1.8415 4.7319 26 1 1.4027 -0.6923 -3.3402 27 1 0.6557 0.5853 -2.3245 28 1 2.9121 1.0363 -3.8932 29 1 2.5951 1.9251 -2.3703 30 1 4.0897 -1.2459 -0.7749 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = -60.115892 kcal Electronic energy + Delta-G solvation = -12687.207180 eV Core-core repulsion = 10481.417869 eV Total energy + Delta-G solvation = -2205.789311 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.08274 -36.82229 -33.95575 -31.97523 -31.04322 -27.36795 -26.16455 -23.86019 -21.47903 -20.15577 -19.18946 -17.17760 -16.25386 -15.57496 -14.95157 -14.51270 -13.61127 -13.48797 -13.09237 -12.83093 -12.44489 -12.21592 -11.66815 -11.24471 -11.21901 -11.06537 -10.90003 -10.52814 -10.31880 -9.89909 -9.51146 -9.28013 -9.16490 -8.50563 -8.38352 -6.03504 -4.05118 2.95486 3.29273 3.36338 3.39053 3.81802 4.42587 4.65491 4.75219 5.03642 5.32768 5.33515 5.69562 5.70836 5.80357 5.91473 6.03293 6.12349 6.19958 6.44530 6.80259 6.94699 7.03469 7.23826 7.47564 7.60104 7.73764 7.94757 8.38009 8.63728 9.00562 9.58843 11.07739 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.009180 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.210208 B = 3049.237886 C = 3313.049011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 H 0.061 0.939 4 C 0.028 3.972 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.132 3.868 14 H 0.083 0.917 15 C -0.133 4.133 16 C -0.155 4.155 17 C 0.517 3.483 18 O -0.554 6.554 19 N -0.714 5.714 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.037 0.963 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 1.775 -10.509 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.079 0.921 4 C -0.009 4.009 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.027 3.973 14 H 0.101 0.899 15 C -0.171 4.171 16 C -0.195 4.195 17 C 0.303 3.697 18 O -0.433 6.433 19 N -0.367 5.367 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.958 1.852 -10.566 11.433 hybrid contribution -0.030 0.172 1.333 1.345 sum -3.987 2.023 -9.232 10.258 Atomic orbital electron populations 1.21763 0.95467 1.01207 1.00692 1.21612 0.95494 0.99720 0.94897 0.92080 1.19122 0.96200 0.95343 0.90238 1.21205 1.34891 1.08343 0.90988 0.92615 1.25014 0.95222 0.95095 0.99143 1.69950 1.38833 1.21199 1.23484 0.86628 0.78220 0.80430 0.82937 1.20701 1.21278 1.19918 1.21890 0.79198 1.00563 0.95683 0.89874 1.22762 0.98394 0.98631 0.97313 1.22298 0.94335 1.00551 1.02293 1.20875 0.89622 0.79744 0.79481 1.90705 1.19893 1.66841 1.65823 1.46323 1.08715 1.38797 1.42852 0.93333 0.91571 0.94400 0.96588 0.96550 0.93027 0.90641 0.88792 0.88764 0.88041 0.74908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.78 37.16 0.33 -1.85 16 2 C -0.10 -1.80 2.11 -90.62 -0.19 -1.99 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.03 0.67 4.39 -27.88 -0.12 0.55 16 5 C -0.52 -13.96 8.41 -34.44 -0.29 -14.25 16 6 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 1.99 3.04 -67.01 -0.20 1.78 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 15 C -0.13 -1.55 6.52 -25.10 -0.16 -1.71 16 16 C -0.15 -1.98 6.86 -26.74 -0.18 -2.16 16 17 C 0.52 8.89 8.43 -10.86 -0.09 8.80 16 18 O -0.55 -11.62 18.03 5.56 0.10 -11.52 16 19 N -0.71 -11.86 5.34 -52.76 -0.28 -12.15 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.07 1.20 6.95 -51.92 -0.36 0.84 16 22 H 0.04 0.49 6.17 -51.93 -0.32 0.17 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.99 5.89 -51.93 -0.31 0.68 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.41 7.01 8.58 -40.82 -0.35 6.66 16 LS Contribution 248.76 15.07 3.75 3.75 Total: -1.00 -31.38 248.76 -5.92 -37.29 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.18 Total: 1.24 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.02 Total: -9.35 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.45 Total: -37.78 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.10 Total: -11.52 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.38 -5.92 -37.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.821 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds