Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47015 * 2 1 4 4 C 1.53003 * 109.46937 * 119.99710 * 2 1 3 5 5 C 1.50700 * 109.47121 * 295.00068 * 4 2 1 6 6 H 1.07997 * 120.00335 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47475 * 89.99303 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99678 * 9 7 5 12 12 H 1.48504 * 109.46794 * 329.99318 * 9 7 5 13 13 C 1.52997 * 109.46942 * 239.99478 * 2 1 3 14 14 H 1.09002 * 110.21843 * 299.30297 * 13 2 1 15 15 C 1.54481 * 110.24345 * 61.23347 * 13 2 1 16 16 C 1.54626 * 101.76755 * 93.67063 * 15 13 2 17 17 C 1.51284 * 104.19401 * 24.79412 * 16 15 13 18 18 O 1.21281 * 124.94178 * 163.70924 * 17 16 15 19 19 N 1.34419 * 110.11783 * 343.74834 * 17 16 15 20 20 H 1.08993 * 109.47495 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46962 * 300.00640 * 1 2 3 22 22 H 1.09001 * 109.46943 * 59.99989 * 1 2 3 23 23 H 1.09005 * 109.47120 * 55.00000 * 4 2 1 24 24 H 1.08998 * 109.47219 * 174.99968 * 4 2 1 25 25 H 0.97004 * 120.00251 * 180.02562 * 8 7 5 26 26 H 1.09001 * 110.96540 * 211.78740 * 15 13 2 27 27 H 1.08999 * 110.97248 * 335.51282 * 15 13 2 28 28 H 1.08993 * 110.48632 * 143.47216 * 16 15 13 29 29 H 1.09000 * 110.48434 * 266.12082 * 16 15 13 30 30 H 0.96999 * 124.34694 * 179.58471 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6763 -1.5186 3.8512 9 14 1.4984 0.5628 5.2497 10 1 0.1714 0.0937 5.7233 11 1 2.5078 0.3535 6.3185 12 1 1.4225 2.0080 4.9166 13 6 2.0400 -0.7214 -1.2492 14 1 1.6935 -1.7548 -1.2552 15 6 1.5605 0.0106 -2.5223 16 6 2.7566 0.9447 -2.8184 17 6 3.9361 0.2540 -2.1697 18 8 5.1002 0.5034 -2.4010 19 7 3.5060 -0.6768 -1.3005 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6053 -1.7198 1.2953 24 1 3.1263 -0.7995 1.2057 25 1 2.9236 -1.8415 4.7319 26 1 1.4027 -0.6923 -3.3402 27 1 0.6557 0.5853 -2.3245 28 1 2.9121 1.0363 -3.8932 29 1 2.5951 1.9251 -2.3703 30 1 4.0897 -1.2459 -0.7749 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -82.065242 kcal Electronic energy + Delta-G solvation = -12688.158975 eV Core-core repulsion = 10481.417869 eV Total energy + Delta-G solvation = -2206.741106 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36750 -38.27467 -35.70291 -33.82258 -32.19694 -29.14816 -27.45325 -25.59428 -22.91526 -21.39627 -20.62201 -18.75781 -18.09085 -16.89980 -16.44024 -16.30233 -15.03101 -14.85150 -14.64536 -14.14010 -13.95049 -13.54590 -13.37665 -12.85416 -12.78013 -12.53936 -12.33688 -12.17968 -11.77751 -11.51590 -11.14093 -10.93480 -10.86252 -10.53010 -9.91428 -8.18124 -6.26299 1.38618 1.39670 1.49769 1.62860 2.40860 2.54357 3.16019 3.50733 3.70756 4.01499 4.25915 4.39161 4.53686 4.67733 4.78065 4.86072 4.97907 5.09484 5.27515 5.30522 5.46475 5.54767 5.57731 5.79286 5.88517 5.96228 6.18081 6.29864 6.90715 7.28101 7.41941 8.93150 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.009180 C = 0.008449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.210208 B = 3049.237886 C = 3313.049011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 H 0.051 0.949 4 C 0.031 3.969 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.130 3.870 14 H 0.092 0.908 15 C -0.116 4.116 16 C -0.146 4.146 17 C 0.504 3.496 18 O -0.601 6.601 19 N -0.720 5.720 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.082 0.918 23 H -0.006 1.006 24 H -0.013 1.013 25 H 0.260 0.740 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 2.828 -11.748 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.109 4.109 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.025 3.975 14 H 0.110 0.890 15 C -0.154 4.154 16 C -0.186 4.186 17 C 0.292 3.708 18 O -0.484 6.484 19 N -0.371 5.371 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.101 0.899 23 H 0.012 0.988 24 H 0.005 0.995 25 H 0.069 0.931 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.922 2.911 -11.813 13.531 hybrid contribution 0.594 -0.192 1.738 1.847 sum -5.328 2.719 -10.075 11.717 Atomic orbital electron populations 1.21711 0.93377 1.01735 1.01775 1.21451 0.97161 0.98516 0.93765 0.93096 1.19028 0.94306 0.94652 0.92596 1.21684 1.34176 1.08531 0.92217 0.92148 1.25911 0.95405 0.96103 1.02584 1.70084 1.40348 1.22948 1.24111 0.85582 0.78024 0.79324 0.78956 1.19661 1.21397 1.18958 1.21976 0.78130 1.01278 0.96089 0.89008 1.22802 0.98279 0.98549 0.95746 1.22359 0.92292 1.00488 1.03438 1.21761 0.90225 0.79533 0.79254 1.90670 1.22212 1.68180 1.67343 1.46563 1.09595 1.38492 1.42402 0.93098 0.93870 0.89925 0.98805 0.99491 0.93114 0.87746 0.86611 0.86173 0.87164 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.78 71.98 0.63 -3.22 16 2 C -0.09 -3.18 2.11 -10.79 -0.02 -3.20 16 3 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.03 1.54 4.39 29.85 0.13 1.67 16 5 C -0.53 -28.85 8.41 25.60 0.22 -28.63 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.13 3.65 3.04 45.44 0.14 3.79 16 14 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.12 -2.17 6.52 31.65 0.21 -1.97 16 16 C -0.15 -3.24 6.86 30.59 0.21 -3.03 16 17 C 0.50 16.93 8.43 87.90 0.74 17.67 16 18 O -0.60 -25.50 18.03 -3.03 -0.05 -25.56 16 19 N -0.72 -23.79 5.34 -439.43 -2.34 -26.14 16 20 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.04 1.49 6.95 -2.38 -0.02 1.47 16 22 H 0.08 1.74 6.17 -2.39 -0.01 1.73 16 23 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 24 H -0.01 -0.72 7.31 -2.39 -0.02 -0.74 16 25 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 27 H 0.12 1.72 5.89 -2.39 -0.01 1.71 16 28 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.40 14.29 8.58 -92.71 -0.80 13.49 16 Total: -1.00 -69.91 248.76 2.96 -66.95 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.34 Total: 11.34 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 2.71 Total: -16.61 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.06 Total: -82.23 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.91 2.96 -66.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.110 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds