Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 H 1.08995 * 110.21484 * 60.69289 * 13 2 1 15 15 C 1.54484 * 110.24158 * 298.76922 * 13 2 1 16 16 C 1.54626 * 101.76314 * 215.58228 * 15 13 2 17 17 C 1.51286 * 104.19743 * 24.79726 * 16 15 13 18 18 O 1.21274 * 124.94341 * 163.72444 * 17 16 15 19 19 N 1.34563 * 110.13690 * 343.67596 * 17 16 15 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 24 24 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 25 25 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 26 26 H 1.08995 * 110.97051 * 333.70298 * 15 13 2 27 27 H 1.08999 * 110.96854 * 97.46368 * 15 13 2 28 28 H 1.09005 * 110.48807 * 143.47634 * 16 15 13 29 29 H 1.09002 * 110.48873 * 265.99106 * 16 15 13 30 30 H 0.97000 * 124.43258 * 179.63922 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 0.7433 1.7750 -4.8433 11 1 2.7170 0.9665 -5.9966 12 1 0.6440 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2492 14 1 1.6936 -1.7547 1.2553 15 6 1.5605 0.0107 2.5223 16 6 2.7689 -0.1778 3.4684 17 6 3.9430 -0.3773 2.5354 18 8 5.1088 -0.2821 2.8558 19 7 3.5061 -0.6768 1.2984 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1263 -0.7996 -1.2056 24 1 1.6053 -1.7198 -1.2952 25 1 2.9227 -1.8423 -4.7318 26 1 1.3835 1.0673 2.3214 27 1 0.6675 -0.4620 2.9311 28 1 2.9158 0.7114 4.0816 29 1 2.6267 -1.0556 4.0988 30 1 4.0845 -0.8410 0.5373 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = -62.749311 kcal Electronic energy + Delta-G solvation = -12597.544181 eV Core-core repulsion = 10391.640676 eV Total energy + Delta-G solvation = -2205.903504 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.02825 -36.84888 -34.07935 -32.03358 -31.07352 -27.40353 -26.15180 -23.73394 -21.47537 -20.11320 -19.35163 -17.10983 -16.15272 -16.02197 -14.67319 -14.58113 -13.52102 -13.46126 -13.27819 -12.67698 -12.49507 -12.29783 -11.70748 -11.62059 -11.07572 -10.96755 -10.93658 -10.55103 -10.38943 -9.93181 -9.54944 -9.24372 -9.13200 -8.59776 -8.41336 -6.05849 -4.07880 2.90417 3.27356 3.35601 3.38600 3.81089 4.40845 4.61955 4.74513 4.99716 5.30076 5.32733 5.61627 5.68043 5.79632 5.89562 6.01592 6.13216 6.21618 6.39697 6.80143 6.92722 6.99650 7.21277 7.46414 7.56845 7.69251 7.92213 8.34813 8.61141 8.98057 9.56546 11.05306 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.052183 B = 0.008627 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.445500 B = 3245.019689 C = 3570.919883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.064 0.936 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.131 3.869 14 H 0.077 0.923 15 C -0.128 4.128 16 C -0.157 4.157 17 C 0.514 3.486 18 O -0.554 6.554 19 N -0.715 5.715 20 H 0.036 0.964 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.014 0.986 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 1.763 10.448 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.082 0.918 4 C -0.011 4.011 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.026 3.974 14 H 0.095 0.905 15 C -0.166 4.166 16 C -0.197 4.197 17 C 0.300 3.700 18 O -0.433 6.433 19 N -0.370 5.370 20 H 0.055 0.945 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.988 1.711 10.575 11.431 hybrid contribution -0.028 0.322 -1.389 1.426 sum -4.016 2.033 9.186 10.229 Atomic orbital electron populations 1.21687 0.95248 1.01216 1.00787 1.21554 0.95773 0.99622 0.94455 0.91786 1.19160 0.95930 0.95576 0.90404 1.21235 1.34989 1.08358 0.90914 0.92473 1.25021 0.95211 0.95063 0.99187 1.69963 1.38814 1.21143 1.23450 0.86565 0.78294 0.80095 0.83226 1.19757 1.21068 1.21041 1.21915 0.79255 0.99956 0.96237 0.90516 1.22718 0.97356 1.02101 0.94418 1.22341 0.94524 1.04386 0.98458 1.20928 0.89588 0.75420 0.84102 1.90705 1.19673 1.53307 1.79573 1.46523 1.08859 1.70061 1.11522 0.94485 0.91537 0.93342 0.96773 0.96388 0.93035 0.89964 0.89601 0.88626 0.88303 0.74439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.79 37.16 0.33 -1.82 16 2 C -0.09 -1.73 1.99 -90.62 -0.18 -1.91 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.03 0.62 4.38 -27.88 -0.12 0.50 16 5 C -0.52 -13.80 8.41 -34.44 -0.29 -14.09 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.00 3.04 -67.01 -0.20 1.79 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.13 -1.49 5.58 -25.10 -0.14 -1.63 16 16 C -0.16 -1.89 6.86 -26.74 -0.18 -2.07 16 17 C 0.51 8.62 8.43 -10.79 -0.09 8.53 16 18 O -0.55 -11.38 18.03 5.56 0.10 -11.28 16 19 N -0.71 -12.02 5.76 -52.73 -0.30 -12.33 16 20 H 0.04 0.48 7.24 -51.93 -0.38 0.11 16 21 H 0.07 1.21 6.95 -51.93 -0.36 0.85 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.01 0.36 6.71 -51.93 -0.35 0.01 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.08 0.95 7.84 -51.93 -0.41 0.54 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.42 7.50 7.59 -40.82 -0.31 7.19 16 LS Contribution 249.56 15.07 3.76 3.76 Total: -1.00 -30.81 249.56 -5.98 -36.78 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.27 Total: 1.52 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.98 Total: -9.23 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.43 Total: -37.71 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.10 Total: -11.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.81 -5.98 -36.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.965 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds