Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 90.00441 * 9 7 5 11 11 H 1.48506 * 109.47247 * 210.00240 * 9 7 5 12 12 H 1.48500 * 109.47404 * 330.00197 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09003 * 110.22127 * 186.93137 * 13 2 1 15 15 C 1.54481 * 110.24526 * 64.99867 * 13 2 1 16 16 C 1.54628 * 101.76778 * 215.58632 * 15 13 2 17 17 C 1.51275 * 104.19579 * 24.79874 * 16 15 13 18 18 O 1.21280 * 124.94310 * 163.74579 * 17 16 15 19 19 N 1.34420 * 110.11491 * 343.74857 * 17 16 15 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 24 24 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 25 25 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 26 26 H 1.09006 * 110.97139 * 333.71176 * 15 13 2 27 27 H 1.09000 * 110.96893 * 97.46623 * 15 13 2 28 28 H 1.09004 * 110.48047 * 143.48098 * 16 15 13 29 29 H 1.09001 * 110.48204 * 265.98613 * 16 15 13 30 30 H 0.97003 * 124.35264 * 179.57361 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.1702 0.0938 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0075 4.9170 13 6 2.0400 -0.7213 -1.2492 14 1 3.1229 -0.8366 -1.2019 15 6 1.6407 0.0621 -2.5193 16 6 1.3613 -1.0823 -3.5209 17 6 1.0069 -2.2637 -2.6449 18 8 0.4546 -3.2726 -3.0295 19 7 1.3931 -2.0323 -1.3784 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7199 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9227 -1.8423 4.7318 26 1 0.7434 0.6561 -2.3453 27 1 2.4618 0.6906 -2.8643 28 1 0.5249 -0.8247 -4.1708 29 1 2.2511 -1.2970 -4.1127 30 1 1.2610 -2.6521 -0.6440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = -60.268749 kcal Electronic energy + Delta-G solvation = -12669.063927 eV Core-core repulsion = 10463.267988 eV Total energy + Delta-G solvation = -2205.795939 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11814 -36.86981 -33.98635 -31.92838 -31.01944 -27.33299 -26.46555 -23.74321 -21.46114 -20.33584 -19.04586 -16.78681 -16.44176 -16.00221 -14.62634 -14.44254 -13.81166 -13.56328 -13.30284 -12.78147 -12.45127 -12.23234 -11.70400 -11.49362 -11.09972 -10.97030 -10.87629 -10.45065 -10.36288 -9.94377 -9.56417 -9.23208 -9.12539 -8.60890 -8.41017 -6.05516 -4.07648 2.90341 3.28292 3.35303 3.37502 3.80635 4.40870 4.61799 4.74610 5.00882 5.30473 5.33034 5.64781 5.65631 5.77344 5.90705 5.96458 6.13339 6.34465 6.46412 6.76571 6.95557 7.02005 7.21465 7.45612 7.56727 7.69159 7.92251 8.35038 8.60274 8.98161 9.56658 11.05604 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064307 B = 0.008236 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.303921 B = 3398.926572 C = 3553.942296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.027 3.973 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.131 3.869 14 H 0.078 0.922 15 C -0.133 4.133 16 C -0.156 4.156 17 C 0.514 3.486 18 O -0.555 6.555 19 N -0.711 5.711 20 H 0.033 0.967 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.015 0.985 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 4.150 -10.298 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.010 4.010 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.026 3.974 14 H 0.096 0.904 15 C -0.171 4.171 16 C -0.196 4.196 17 C 0.301 3.699 18 O -0.434 6.434 19 N -0.365 5.365 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.006 3.597 -10.449 11.097 hybrid contribution -0.197 0.230 1.371 1.404 sum -1.203 3.828 -9.078 9.925 Atomic orbital electron populations 1.21721 0.95816 1.01156 1.00280 1.21538 0.95847 0.99607 0.94443 0.90950 1.19153 0.96105 0.95389 0.90357 1.21205 1.34984 1.08439 0.90946 0.92514 1.25021 0.95199 0.95080 0.99173 1.69952 1.38751 1.21141 1.23543 0.86620 0.78260 0.80384 0.82892 1.20728 1.21264 1.19891 1.21939 0.97003 0.82289 0.96145 0.90387 1.22784 1.03163 0.97088 0.94038 1.22320 1.03872 0.94812 0.98612 1.20863 0.77356 0.87868 0.83862 1.90708 1.43931 1.31110 1.77654 1.46407 1.59359 1.20465 1.10313 0.94782 0.91829 0.93493 0.96665 0.96530 0.92987 0.89639 0.89674 0.88688 0.88338 0.74681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.56 37.16 0.32 -2.01 16 2 C -0.10 -1.72 2.19 -90.62 -0.20 -1.92 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.03 0.64 4.32 -27.88 -0.12 0.52 16 5 C -0.52 -13.77 8.41 -34.44 -0.29 -14.06 16 6 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.13 1.97 3.20 -67.01 -0.21 1.75 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 15 C -0.13 -1.54 6.53 -25.10 -0.16 -1.70 16 16 C -0.16 -1.86 6.86 -26.74 -0.18 -2.04 16 17 C 0.51 8.44 8.43 -10.86 -0.09 8.35 16 18 O -0.55 -11.21 18.03 5.56 0.10 -11.11 16 19 N -0.71 -11.57 4.70 -52.76 -0.25 -11.82 16 20 H 0.03 0.50 6.37 -51.93 -0.33 0.17 16 21 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 22 H 0.05 0.86 7.43 -51.93 -0.39 0.47 16 23 H 0.02 0.38 7.37 -51.93 -0.38 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.09 0.98 6.12 -51.93 -0.32 0.66 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.41 7.18 8.14 -40.82 -0.33 6.85 16 LS Contribution 247.43 15.07 3.73 3.73 Total: -1.00 -30.64 247.43 -5.90 -36.53 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.15 Total: 1.56 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.04 Total: -9.64 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.49 Total: -37.18 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.10 Total: -11.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.64 -5.90 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.736 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds