Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 90.00441 * 9 7 5 11 11 H 1.48506 * 109.47247 * 210.00240 * 9 7 5 12 12 H 1.48500 * 109.47404 * 330.00197 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09003 * 110.22127 * 186.93137 * 13 2 1 15 15 C 1.54481 * 110.24526 * 64.99867 * 13 2 1 16 16 C 1.54628 * 101.76778 * 215.58632 * 15 13 2 17 17 C 1.51275 * 104.19579 * 24.79874 * 16 15 13 18 18 O 1.21280 * 124.94310 * 163.74579 * 17 16 15 19 19 N 1.34420 * 110.11491 * 343.74857 * 17 16 15 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 24 24 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 25 25 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 26 26 H 1.09006 * 110.97139 * 333.71176 * 15 13 2 27 27 H 1.09000 * 110.96893 * 97.46623 * 15 13 2 28 28 H 1.09004 * 110.48047 * 143.48098 * 16 15 13 29 29 H 1.09001 * 110.48204 * 265.98613 * 16 15 13 30 30 H 0.97003 * 124.35264 * 179.57361 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.1702 0.0938 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0075 4.9170 13 6 2.0400 -0.7213 -1.2492 14 1 3.1229 -0.8366 -1.2019 15 6 1.6407 0.0621 -2.5193 16 6 1.3613 -1.0823 -3.5209 17 6 1.0069 -2.2637 -2.6449 18 8 0.4546 -3.2726 -3.0295 19 7 1.3931 -2.0323 -1.3784 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7199 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9227 -1.8423 4.7318 26 1 0.7434 0.6561 -2.3453 27 1 2.4618 0.6906 -2.8643 28 1 0.5249 -0.8247 -4.1708 29 1 2.2511 -1.2970 -4.1127 30 1 1.2610 -2.6521 -0.6440 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504016.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = -81.096462 kcal Electronic energy + Delta-G solvation = -12669.967085 eV Core-core repulsion = 10463.267988 eV Total energy + Delta-G solvation = -2206.699097 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.36671 -38.29065 -35.70467 -33.77137 -32.11418 -29.12582 -27.79716 -25.47529 -22.81603 -21.56141 -20.46970 -18.55859 -17.85819 -17.39017 -16.53767 -15.76549 -15.25367 -14.98667 -14.54041 -14.44827 -13.80138 -13.48095 -13.33263 -12.98648 -12.79171 -12.59150 -12.38767 -12.10971 -11.70849 -11.60426 -11.09465 -10.90943 -10.79361 -10.52697 -9.95684 -8.17149 -6.25592 1.40675 1.41162 1.51539 1.64770 2.42105 2.55036 3.17236 3.51469 3.72469 3.99003 4.29728 4.35511 4.45489 4.56169 4.86190 4.89602 4.92903 5.13327 5.22657 5.28142 5.42951 5.49612 5.55406 5.77753 5.88486 5.92368 6.20577 6.29649 6.91516 7.28969 7.42985 8.94145 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064307 B = 0.008236 C = 0.007877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.303921 B = 3398.926572 C = 3553.942296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.031 3.969 5 C -0.528 4.528 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.261 1.261 13 C 0.130 3.870 14 H 0.080 0.920 15 C -0.118 4.118 16 C -0.143 4.143 17 C 0.505 3.495 18 O -0.601 6.601 19 N -0.718 5.718 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.031 0.969 23 H -0.011 1.011 24 H -0.009 1.009 25 H 0.260 0.740 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 6.270 -11.552 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.185 1.185 13 C 0.026 3.974 14 H 0.098 0.902 15 C -0.156 4.156 16 C -0.183 4.183 17 C 0.293 3.707 18 O -0.484 6.484 19 N -0.369 5.369 20 H 0.088 0.912 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.007 0.993 24 H 0.010 0.990 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.226 5.759 -11.714 13.110 hybrid contribution -0.114 -0.462 1.779 1.842 sum -1.340 5.297 -9.934 11.338 Atomic orbital electron populations 1.21649 0.95246 1.00402 1.01087 1.21372 0.96174 0.99690 0.93239 0.89805 1.19053 0.94392 0.94538 0.92636 1.21691 1.34155 1.08653 0.92085 0.91843 1.25914 0.95402 0.96069 1.02612 1.70089 1.40369 1.22937 1.24137 0.85572 0.77726 0.79533 0.78975 1.20427 1.21228 1.18470 1.21990 0.96936 0.81863 0.96641 0.90182 1.22810 1.04733 0.96741 0.91310 1.22359 1.05616 0.92188 0.98089 1.21724 0.76215 0.88534 0.84223 1.90678 1.45995 1.33352 1.78374 1.46619 1.59177 1.20818 1.10327 0.91241 0.93689 0.95032 0.99292 0.99016 0.93117 0.88885 0.86266 0.86715 0.85922 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.56 71.98 0.62 -3.64 16 2 C -0.09 -2.99 2.19 -10.79 -0.02 -3.01 16 3 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.03 1.49 4.32 29.85 0.13 1.62 16 5 C -0.53 -28.23 8.41 25.60 0.22 -28.02 16 6 H 0.06 3.24 7.05 -2.91 -0.02 3.22 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 9 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.13 3.65 3.20 45.44 0.15 3.80 16 14 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.12 -2.21 6.53 31.65 0.21 -2.00 16 16 C -0.14 -2.85 6.86 30.59 0.21 -2.64 16 17 C 0.50 15.94 8.43 87.90 0.74 16.68 16 18 O -0.60 -24.29 18.03 -3.03 -0.05 -24.35 16 19 N -0.72 -23.11 4.70 -439.44 -2.07 -25.17 16 20 H 0.07 1.84 6.37 -2.39 -0.02 1.82 16 21 H 0.04 1.66 6.95 -2.39 -0.02 1.64 16 22 H 0.03 1.13 7.43 -2.38 -0.02 1.11 16 23 H -0.01 -0.60 7.37 -2.39 -0.02 -0.62 16 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.09 1.65 6.12 -2.38 -0.01 1.63 16 27 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.40 14.50 8.14 -92.71 -0.76 13.75 16 Total: -1.00 -67.78 247.43 3.27 -64.51 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.38 Total: 12.02 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 2.70 Total: -16.91 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.78 Total: -80.71 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.78 3.27 -64.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504016.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.591 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds