Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47123 * 2 1 4 4 C 1.50696 * 109.47087 * 119.99965 * 2 1 3 5 5 H 1.07997 * 119.99833 * 91.93009 * 4 2 1 6 6 C 1.37878 * 119.99922 * 271.93263 * 4 2 1 7 7 N 1.31512 * 120.00053 * 5.71421 * 6 4 2 8 8 Si 1.86801 * 120.00040 * 185.71017 * 6 4 2 9 9 H 1.48491 * 109.47434 * 270.00185 * 8 6 4 10 10 H 1.48504 * 109.47205 * 149.99748 * 8 6 4 11 11 H 1.48507 * 109.46829 * 30.00476 * 8 6 4 12 12 C 1.52994 * 109.47310 * 240.00230 * 2 1 3 13 13 H 1.09001 * 110.21485 * 296.15714 * 12 2 1 14 14 C 1.54480 * 110.24830 * 58.08090 * 12 2 1 15 15 C 1.54625 * 101.76375 * 93.58864 * 14 12 2 16 16 C 1.51284 * 104.19619 * 24.79601 * 15 14 12 17 17 O 1.21282 * 124.94410 * 163.75009 * 16 15 14 18 18 N 1.34616 * 110.15010 * 343.77004 * 16 15 14 19 19 C 1.46502 * 124.47021 * 179.53311 * 18 16 15 20 20 H 1.09007 * 109.47032 * 53.79945 * 1 2 3 21 21 H 1.08991 * 109.47057 * 173.79764 * 1 2 3 22 22 H 1.08995 * 109.47369 * 293.80174 * 1 2 3 23 23 H 0.96999 * 120.00541 * 355.08595 * 7 6 4 24 24 H 1.09004 * 110.97413 * 211.70619 * 14 12 2 25 25 H 1.09001 * 110.97115 * 335.46627 * 14 12 2 26 26 H 1.08996 * 110.49063 * 143.47846 * 15 14 12 27 27 H 1.09005 * 110.48768 * 265.99022 * 15 14 12 28 28 H 1.08999 * 109.47072 * 272.43614 * 19 18 16 29 29 H 1.08997 * 109.47110 * 32.43573 * 19 18 16 30 30 H 1.08995 * 109.47009 * 152.43736 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2420 -1.7692 1.1948 6 6 2.2242 -0.0086 2.4016 7 7 1.8636 1.2539 2.4783 8 14 2.9960 -0.8509 3.8795 9 1 1.9304 -1.4636 4.7126 10 1 3.7413 0.1490 4.6859 11 1 3.9303 -1.9076 3.4149 12 6 2.0401 -0.7212 -1.2492 13 1 1.7405 -1.7690 -1.2279 14 6 1.4958 -0.0355 -2.5220 15 6 2.6397 0.9468 -2.8646 16 6 3.8656 0.3230 -2.2346 17 8 5.0109 0.6217 -2.4992 18 7 3.5010 -0.6123 -1.3377 19 6 4.4390 -1.4177 -0.5518 20 1 -0.3633 0.6070 -0.8293 21 1 -0.3633 -1.0216 -0.1110 22 1 -0.3634 0.4147 0.9402 23 1 1.5290 1.7114 1.6912 24 1 1.3505 -0.7598 -3.3236 25 1 0.5709 0.5012 -2.3109 26 1 2.7642 1.0259 -3.9445 27 1 2.4430 1.9276 -2.4314 28 1 4.7131 -2.3094 -1.1156 29 1 5.3336 -0.8316 -0.3415 30 1 3.9682 -1.7115 0.3863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -48.180142 kcal Electronic energy + Delta-G solvation = -13188.294095 eV Core-core repulsion = 10983.022358 eV Total energy + Delta-G solvation = -2205.271738 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87107 -36.46620 -33.74112 -32.30344 -30.43338 -26.07162 -25.88985 -24.93227 -22.02772 -19.82948 -18.74418 -17.05075 -16.03889 -15.31000 -14.92241 -13.83626 -13.74423 -13.21229 -13.12209 -12.85128 -12.31727 -11.77984 -11.63934 -11.22127 -11.11098 -10.83464 -10.75784 -10.64275 -10.56672 -10.17087 -9.66195 -9.19126 -8.60410 -8.31182 -7.85249 -6.41757 -4.11644 3.18770 3.37897 3.41082 3.55987 3.80403 4.45858 4.90931 5.03650 5.28350 5.33398 5.60915 5.93416 5.96438 6.10500 6.16648 6.20740 6.22235 6.33688 6.49565 6.61825 6.76963 6.83024 7.16378 7.26375 7.52821 7.89796 8.12760 8.33999 8.79753 8.81879 9.58847 10.97621 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037418 B = 0.013880 C = 0.011660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.120425 B = 2016.811525 C = 2400.735408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.016 3.984 3 H 0.036 0.964 4 C -0.590 4.590 5 H 0.050 0.950 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.288 1.288 12 C 0.142 3.858 13 H 0.072 0.928 14 C -0.137 4.137 15 C -0.151 4.151 16 C 0.509 3.491 17 O -0.560 6.560 18 N -0.590 5.590 19 C 0.095 3.905 20 H 0.022 0.978 21 H 0.037 0.963 22 H 0.050 0.950 23 H 0.271 0.729 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 -3.851 -6.719 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.003 4.003 3 H 0.054 0.946 4 C -0.628 4.628 5 H 0.068 0.932 6 C -0.182 4.182 7 N -0.545 5.545 8 Si 0.892 3.108 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.214 1.214 12 C 0.039 3.961 13 H 0.090 0.910 14 C -0.174 4.174 15 C -0.191 4.191 16 C 0.297 3.703 17 O -0.440 6.440 18 N -0.320 5.320 19 C -0.047 4.047 20 H 0.041 0.959 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.547 -3.539 -5.199 6.313 hybrid contribution -0.495 -0.267 -1.461 1.565 sum -1.042 -3.806 -6.660 7.741 Atomic orbital electron populations 1.21961 0.98899 0.99113 0.99308 1.19238 0.91864 0.96799 0.92405 0.94622 1.21797 1.48351 0.96133 0.96525 0.93151 1.25727 0.95145 0.96261 1.01098 1.70758 1.40225 1.11185 1.32347 0.83621 0.76507 0.75120 0.75528 1.21506 1.21032 1.21369 1.21873 0.78552 1.00056 0.95648 0.91014 1.22800 0.98633 0.98400 0.97614 1.22247 0.94442 1.00601 1.01831 1.20907 0.89916 0.79604 0.79891 1.90632 1.22175 1.65293 1.65921 1.48029 1.07725 1.37509 1.38760 1.21663 0.92836 0.93430 0.96782 0.95884 0.94397 0.93138 0.91781 0.91203 0.89017 0.89139 0.88339 0.94397 0.92090 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.74 37.16 0.32 -2.42 16 2 C 0.02 0.37 1.78 -91.78 -0.16 0.21 16 3 H 0.04 0.90 6.78 -51.93 -0.35 0.55 16 4 C -0.59 -14.96 6.40 -34.44 -0.22 -15.18 16 5 H 0.05 1.26 6.82 -52.49 -0.36 0.91 16 6 C 0.02 0.61 5.45 -17.82 -0.10 0.51 16 7 N -0.91 -26.35 13.63 55.43 0.76 -25.60 16 8 Si 1.06 24.21 29.91 -169.99 -5.08 19.13 16 9 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.14 2.72 2.70 -67.01 -0.18 2.54 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 14 C -0.14 -2.10 6.51 -25.10 -0.16 -2.26 16 15 C -0.15 -2.46 6.86 -26.74 -0.18 -2.64 16 16 C 0.51 10.55 8.03 -10.77 -0.09 10.46 16 17 O -0.56 -13.29 17.64 5.56 0.10 -13.19 16 18 N -0.59 -12.05 2.95 -172.65 -0.51 -12.56 16 19 C 0.09 1.85 10.64 59.85 0.64 2.49 16 20 H 0.02 0.40 6.28 -51.92 -0.33 0.07 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.27 7.80 6.69 -40.82 -0.27 7.53 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.09 1.32 5.79 -51.93 -0.30 1.02 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.22 7.99 -51.93 -0.41 0.81 16 30 H 0.10 2.05 5.38 -51.93 -0.28 1.77 16 LS Contribution 245.25 15.07 3.70 3.70 Total: -1.00 -30.23 245.25 -5.24 -35.47 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.06 Total: -0.65 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.13 Total: -6.30 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.25 Total: -38.16 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.10 Total: -13.19 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.23 -5.24 -35.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.713 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds