Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47123 * 2 1 4 4 C 1.50696 * 109.47087 * 119.99965 * 2 1 3 5 5 H 1.07997 * 119.99833 * 91.93009 * 4 2 1 6 6 C 1.37878 * 119.99922 * 271.93263 * 4 2 1 7 7 N 1.31512 * 120.00053 * 5.71421 * 6 4 2 8 8 Si 1.86801 * 120.00040 * 185.71017 * 6 4 2 9 9 H 1.48491 * 109.47434 * 270.00185 * 8 6 4 10 10 H 1.48504 * 109.47205 * 149.99748 * 8 6 4 11 11 H 1.48507 * 109.46829 * 30.00476 * 8 6 4 12 12 C 1.52994 * 109.47310 * 240.00230 * 2 1 3 13 13 H 1.09001 * 110.21485 * 296.15714 * 12 2 1 14 14 C 1.54480 * 110.24830 * 58.08090 * 12 2 1 15 15 C 1.54625 * 101.76375 * 93.58864 * 14 12 2 16 16 C 1.51284 * 104.19619 * 24.79601 * 15 14 12 17 17 O 1.21282 * 124.94410 * 163.75009 * 16 15 14 18 18 N 1.34616 * 110.15010 * 343.77004 * 16 15 14 19 19 C 1.46502 * 124.47021 * 179.53311 * 18 16 15 20 20 H 1.09007 * 109.47032 * 53.79945 * 1 2 3 21 21 H 1.08991 * 109.47057 * 173.79764 * 1 2 3 22 22 H 1.08995 * 109.47369 * 293.80174 * 1 2 3 23 23 H 0.96999 * 120.00541 * 355.08595 * 7 6 4 24 24 H 1.09004 * 110.97413 * 211.70619 * 14 12 2 25 25 H 1.09001 * 110.97115 * 335.46627 * 14 12 2 26 26 H 1.08996 * 110.49063 * 143.47846 * 15 14 12 27 27 H 1.09005 * 110.48768 * 265.99022 * 15 14 12 28 28 H 1.08999 * 109.47072 * 272.43614 * 19 18 16 29 29 H 1.08997 * 109.47110 * 32.43573 * 19 18 16 30 30 H 1.08995 * 109.47009 * 152.43736 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.2420 -1.7692 1.1948 6 6 2.2242 -0.0086 2.4016 7 7 1.8636 1.2539 2.4783 8 14 2.9960 -0.8509 3.8795 9 1 1.9304 -1.4636 4.7126 10 1 3.7413 0.1490 4.6859 11 1 3.9303 -1.9076 3.4149 12 6 2.0401 -0.7212 -1.2492 13 1 1.7405 -1.7690 -1.2279 14 6 1.4958 -0.0355 -2.5220 15 6 2.6397 0.9468 -2.8646 16 6 3.8656 0.3230 -2.2346 17 8 5.0109 0.6217 -2.4992 18 7 3.5010 -0.6123 -1.3377 19 6 4.4390 -1.4177 -0.5518 20 1 -0.3633 0.6070 -0.8293 21 1 -0.3633 -1.0216 -0.1110 22 1 -0.3634 0.4147 0.9402 23 1 1.5290 1.7114 1.6912 24 1 1.3505 -0.7598 -3.3236 25 1 0.5709 0.5012 -2.3109 26 1 2.7642 1.0259 -3.9445 27 1 2.4430 1.9276 -2.4314 28 1 4.7131 -2.3094 -1.1156 29 1 5.3336 -0.8316 -0.3415 30 1 3.9682 -1.7115 0.3863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -67.467367 kcal Electronic energy + Delta-G solvation = -13189.130452 eV Core-core repulsion = 10983.022358 eV Total energy + Delta-G solvation = -2206.108095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.42321 -38.15798 -35.60578 -33.80313 -32.21130 -27.59120 -27.41708 -26.84706 -23.67093 -21.43954 -20.33140 -18.92572 -17.61782 -16.89286 -16.54050 -15.65670 -15.45959 -14.84086 -14.71085 -14.40712 -13.72978 -13.37314 -13.28835 -12.93298 -12.86048 -12.49553 -12.34461 -12.15356 -12.13260 -11.95199 -11.32592 -10.80897 -10.57012 -10.26778 -9.48592 -8.52489 -6.20628 1.52782 1.59572 1.60084 1.74859 2.28542 2.58511 3.27096 3.51103 3.70276 4.03479 4.26537 4.44254 4.54083 4.59978 4.65934 4.78132 4.83107 4.94476 4.99807 5.04400 5.08428 5.31664 5.45273 5.59723 5.83582 6.13656 6.29661 6.36206 6.73645 7.21938 7.55916 8.87659 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037418 B = 0.013880 C = 0.011660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.120425 B = 2016.811525 C = 2400.735408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.012 3.988 3 H 0.002 0.998 4 C -0.583 4.583 5 H 0.052 0.948 6 C -0.031 4.031 7 N -0.946 5.946 8 Si 1.100 2.900 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.266 1.266 12 C 0.141 3.859 13 H 0.083 0.917 14 C -0.122 4.122 15 C -0.144 4.144 16 C 0.494 3.506 17 O -0.599 6.599 18 N -0.598 5.598 19 C 0.093 3.907 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.017 0.983 23 H 0.259 0.741 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -5.106 -8.160 9.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.008 4.008 3 H 0.020 0.980 4 C -0.621 4.621 5 H 0.070 0.930 6 C -0.229 4.229 7 N -0.585 5.585 8 Si 0.924 3.076 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.191 1.191 12 C 0.037 3.963 13 H 0.101 0.899 14 C -0.159 4.159 15 C -0.184 4.184 16 C 0.284 3.716 17 O -0.483 6.483 18 N -0.328 5.328 19 C -0.049 4.049 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.140 0.860 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.450 -4.825 -6.649 8.342 hybrid contribution -0.208 0.089 -1.035 1.060 sum -1.658 -4.736 -7.684 9.178 Atomic orbital electron populations 1.21787 0.96987 1.00450 0.99009 1.19247 0.93353 0.94935 0.93257 0.98021 1.22179 1.46319 0.96247 0.97338 0.92957 1.26881 0.95625 0.96258 1.04163 1.70873 1.43099 1.12466 1.32022 0.83152 0.76456 0.74716 0.73287 1.20254 1.22223 1.19069 1.21892 0.77814 1.00583 0.95962 0.89915 1.22816 0.98272 0.98486 0.96316 1.22295 0.92369 1.00347 1.03346 1.21736 0.90685 0.79371 0.79842 1.90601 1.24106 1.66356 1.67214 1.48287 1.08492 1.37515 1.38522 1.21653 0.92202 0.94262 0.96805 0.92509 0.92897 0.96387 0.93076 0.87768 0.87655 0.86040 0.88347 0.91554 0.93542 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.74 71.98 0.63 -4.20 16 2 C 0.01 0.52 1.78 -11.54 -0.02 0.49 16 3 H 0.00 0.08 6.78 -2.39 -0.02 0.06 16 4 C -0.58 -29.31 6.40 25.60 0.16 -29.14 16 5 H 0.05 2.57 6.82 -2.91 -0.02 2.55 16 6 C -0.03 -1.70 5.45 84.66 0.46 -1.23 16 7 N -0.95 -56.18 13.63 21.45 0.29 -55.89 16 8 Si 1.10 48.84 29.91 68.60 2.05 50.89 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 C 0.14 5.01 2.70 45.44 0.12 5.13 16 13 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 14 C -0.12 -3.20 6.51 31.65 0.21 -2.99 16 15 C -0.14 -4.25 6.86 30.59 0.21 -4.04 16 16 C 0.49 19.82 8.03 87.87 0.71 20.52 16 17 O -0.60 -28.29 17.64 -3.04 -0.05 -28.34 16 18 N -0.60 -23.60 2.95 -818.62 -2.41 -26.01 16 19 C 0.09 3.55 10.64 127.77 1.36 4.91 16 20 H 0.06 1.80 6.28 -2.38 -0.01 1.79 16 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.26 15.43 6.69 -92.71 -0.62 14.81 16 24 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.11 2.53 5.79 -2.39 -0.01 2.52 16 26 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 30 H 0.09 3.50 5.38 -2.39 -0.01 3.49 16 Total: -1.00 -66.33 245.25 4.98 -61.35 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.27 Total: 8.55 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 3.84 Total: -10.55 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.12 Total: -81.90 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.05 Total: 50.89 kcal Total: -66.33 4.98 -61.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.115 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds