Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47362 * 239.99994 * 2 1 3 5 5 H 1.07998 * 119.99688 * 245.61824 * 4 2 1 6 6 C 1.37875 * 119.99980 * 65.61503 * 4 2 1 7 7 N 1.31514 * 120.00226 * 7.43562 * 6 4 2 8 8 Si 1.86805 * 120.00036 * 187.43553 * 6 4 2 9 9 H 1.48500 * 109.47232 * 84.99490 * 8 6 4 10 10 H 1.48500 * 109.46995 * 204.99666 * 8 6 4 11 11 H 1.48496 * 109.46819 * 324.99461 * 8 6 4 12 12 C 1.53000 * 109.47165 * 119.99454 * 2 1 3 13 13 H 1.08997 * 110.21221 * 61.93364 * 12 2 1 14 14 C 1.54473 * 110.24704 * 300.00439 * 12 2 1 15 15 C 1.54632 * 101.76246 * 266.41029 * 14 12 2 16 16 C 1.51279 * 104.19633 * 335.20755 * 15 14 12 17 17 O 1.21281 * 124.93717 * 196.22982 * 16 15 14 18 18 N 1.34416 * 110.11821 * 16.49229 * 16 15 14 19 19 C 1.46493 * 124.35095 * 180.16821 * 18 16 15 20 20 H 1.09001 * 109.46714 * 65.83602 * 1 2 3 21 21 H 1.08995 * 109.46516 * 185.83446 * 1 2 3 22 22 H 1.08996 * 109.46835 * 305.83798 * 1 2 3 23 23 H 0.97003 * 120.00424 * 180.02562 * 7 6 4 24 24 H 1.08998 * 110.97209 * 148.29764 * 14 12 2 25 25 H 1.09002 * 110.97291 * 24.53088 * 14 12 2 26 26 H 1.08994 * 110.48829 * 216.52132 * 15 14 12 27 27 H 1.09010 * 110.48198 * 93.88443 * 15 14 12 28 28 H 1.09005 * 109.47427 * 0.02562 * 19 18 16 29 29 H 1.09004 * 109.47788 * 120.02087 * 19 18 16 30 30 H 1.09002 * 109.47046 * 240.02096 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5765 -1.6383 -1.1339 6 6 1.7975 -0.1757 -2.4794 7 7 1.2661 1.0220 -2.5927 8 14 2.2339 -1.1525 -4.0108 9 1 1.1152 -2.0687 -4.3490 10 1 2.4694 -0.2200 -5.1422 11 1 3.4639 -1.9452 -3.7583 12 6 2.0401 -0.7211 1.2493 13 1 1.7119 -1.7605 1.2445 14 6 1.5350 -0.0069 2.5225 15 6 2.7106 0.9475 2.8359 16 6 3.9087 0.2835 2.1940 17 8 5.0658 0.5539 2.4372 18 7 3.5044 -0.6457 1.3109 19 6 4.4092 -1.4786 0.5149 20 1 -0.3633 0.4207 -0.9376 21 1 -0.3632 -1.0223 0.1045 22 1 -0.3633 0.6017 0.8331 23 1 1.1005 1.3980 -3.4713 24 1 1.3828 -0.7180 3.3344 25 1 0.6217 0.5526 2.3197 26 1 2.8542 1.0350 3.9128 27 1 2.5347 1.9278 2.3927 28 1 5.4419 -1.2245 0.7540 29 1 4.2316 -2.5295 0.7437 30 1 4.2276 -1.3019 -0.5452 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = -43.545381 kcal Electronic energy + Delta-G solvation = -13119.108726 eV Core-core repulsion = 10914.037966 eV Total energy + Delta-G solvation = -2205.070760 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.82672 -36.35188 -33.48221 -32.27045 -30.52128 -26.03417 -25.83247 -25.24169 -21.98797 -19.60207 -18.61495 -16.57619 -15.90383 -15.47609 -14.87333 -14.41315 -13.41261 -13.04720 -12.96516 -12.43477 -12.23966 -12.01325 -11.54540 -11.32362 -11.06949 -10.89377 -10.61769 -10.59380 -10.39475 -10.07341 -9.59768 -9.16807 -8.86144 -8.40671 -7.74826 -6.07676 -4.10155 3.24324 3.26242 3.33807 3.34682 3.84514 4.37565 4.97715 5.12076 5.25909 5.38783 5.67315 5.97278 6.05068 6.10653 6.22487 6.31251 6.33056 6.51670 6.65072 6.74366 6.98560 7.05501 7.27933 7.60935 7.80582 7.88311 8.01673 8.33390 8.86450 8.91087 9.52776 11.01226 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040487 B = 0.012916 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.417221 B = 2167.405635 C = 2536.291900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.034 3.966 3 H 0.037 0.963 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.137 3.863 13 H 0.072 0.928 14 C -0.135 4.135 15 C -0.151 4.151 16 C 0.511 3.489 17 O -0.564 6.564 18 N -0.591 5.591 19 C 0.090 3.910 20 H 0.068 0.932 21 H 0.028 0.972 22 H 0.017 0.983 23 H 0.261 0.739 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -3.071 6.580 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.055 0.945 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.034 3.966 13 H 0.090 0.910 14 C -0.172 4.172 15 C -0.191 4.191 16 C 0.299 3.701 17 O -0.444 6.444 18 N -0.322 5.322 19 C -0.052 4.052 20 H 0.087 0.913 21 H 0.047 0.953 22 H 0.036 0.964 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.494 -2.870 6.501 7.123 hybrid contribution 0.112 -0.520 -1.092 1.215 sum -0.382 -3.390 5.409 6.395 Atomic orbital electron populations 1.21779 0.98411 0.98308 1.00424 1.19041 0.92282 0.96645 0.90514 0.94530 1.21132 1.35726 1.07948 0.90509 0.92201 1.24939 0.95280 0.94617 0.98934 1.69942 1.44083 1.14766 1.23707 0.86714 0.78816 0.80028 0.83077 1.20610 1.21374 1.19949 1.22003 0.78168 1.00151 0.96308 0.90951 1.22768 0.98529 0.98449 0.97500 1.22254 0.94481 1.00664 1.01690 1.20847 0.89735 0.79785 0.79742 1.90627 1.20772 1.66478 1.66545 1.48003 1.07913 1.37115 1.39172 1.21712 0.92737 0.92861 0.97898 0.91260 0.95285 0.96395 0.92965 0.91336 0.88889 0.89252 0.88177 0.91588 0.93371 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.72 37.16 0.32 -2.48 16 2 C 0.03 0.79 1.94 -91.77 -0.18 0.61 16 3 H 0.04 0.96 8.10 -51.93 -0.42 0.53 16 4 C -0.52 -13.06 7.05 -34.44 -0.24 -13.30 16 5 H 0.06 1.48 5.78 -52.49 -0.30 1.17 16 6 C 0.06 1.70 5.19 -17.82 -0.09 1.61 16 7 N -0.89 -24.70 12.07 55.43 0.67 -24.03 16 8 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.14 2.61 2.69 -67.01 -0.18 2.43 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 14 C -0.13 -2.08 6.52 -25.10 -0.16 -2.24 16 15 C -0.15 -2.45 6.86 -26.74 -0.18 -2.63 16 16 C 0.51 10.43 8.02 -10.86 -0.09 10.34 16 17 O -0.56 -13.15 17.35 5.56 0.10 -13.05 16 18 N -0.59 -11.87 2.92 -172.71 -0.50 -12.38 16 19 C 0.09 1.70 10.23 59.84 0.61 2.31 16 20 H 0.07 1.69 6.72 -51.93 -0.35 1.34 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.02 0.32 6.33 -51.93 -0.33 -0.01 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.37 5.90 -51.93 -0.31 1.07 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 28 H 0.07 1.22 7.53 -51.93 -0.39 0.83 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.83 5.66 -51.93 -0.29 1.54 16 LS Contribution 243.62 15.07 3.67 3.67 Total: -1.00 -29.49 243.62 -5.35 -34.84 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.06 Total: -1.23 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.19 Total: -3.35 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.16 Total: -36.41 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.10 Total: -13.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.49 -5.35 -34.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.707 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds