Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.50700 * 109.47362 * 239.99994 * 2 1 3 5 5 H 1.07998 * 119.99688 * 245.61824 * 4 2 1 6 6 C 1.37875 * 119.99980 * 65.61503 * 4 2 1 7 7 N 1.31514 * 120.00226 * 7.43562 * 6 4 2 8 8 Si 1.86805 * 120.00036 * 187.43553 * 6 4 2 9 9 H 1.48500 * 109.47232 * 84.99490 * 8 6 4 10 10 H 1.48500 * 109.46995 * 204.99666 * 8 6 4 11 11 H 1.48496 * 109.46819 * 324.99461 * 8 6 4 12 12 C 1.53000 * 109.47165 * 119.99454 * 2 1 3 13 13 H 1.08997 * 110.21221 * 61.93364 * 12 2 1 14 14 C 1.54473 * 110.24704 * 300.00439 * 12 2 1 15 15 C 1.54632 * 101.76246 * 266.41029 * 14 12 2 16 16 C 1.51279 * 104.19633 * 335.20755 * 15 14 12 17 17 O 1.21281 * 124.93717 * 196.22982 * 16 15 14 18 18 N 1.34416 * 110.11821 * 16.49229 * 16 15 14 19 19 C 1.46493 * 124.35095 * 180.16821 * 18 16 15 20 20 H 1.09001 * 109.46714 * 65.83602 * 1 2 3 21 21 H 1.08995 * 109.46516 * 185.83446 * 1 2 3 22 22 H 1.08996 * 109.46835 * 305.83798 * 1 2 3 23 23 H 0.97003 * 120.00424 * 180.02562 * 7 6 4 24 24 H 1.08998 * 110.97209 * 148.29764 * 14 12 2 25 25 H 1.09002 * 110.97291 * 24.53088 * 14 12 2 26 26 H 1.08994 * 110.48829 * 216.52132 * 15 14 12 27 27 H 1.09010 * 110.48198 * 93.88443 * 15 14 12 28 28 H 1.09005 * 109.47427 * 0.02562 * 19 18 16 29 29 H 1.09004 * 109.47788 * 120.02087 * 19 18 16 30 30 H 1.09002 * 109.47046 * 240.02096 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5765 -1.6383 -1.1339 6 6 1.7975 -0.1757 -2.4794 7 7 1.2661 1.0220 -2.5927 8 14 2.2339 -1.1525 -4.0108 9 1 1.1152 -2.0687 -4.3490 10 1 2.4694 -0.2200 -5.1422 11 1 3.4639 -1.9452 -3.7583 12 6 2.0401 -0.7211 1.2493 13 1 1.7119 -1.7605 1.2445 14 6 1.5350 -0.0069 2.5225 15 6 2.7106 0.9475 2.8359 16 6 3.9087 0.2835 2.1940 17 8 5.0658 0.5539 2.4372 18 7 3.5044 -0.6457 1.3109 19 6 4.4092 -1.4786 0.5149 20 1 -0.3633 0.4207 -0.9376 21 1 -0.3632 -1.0223 0.1045 22 1 -0.3633 0.6017 0.8331 23 1 1.1005 1.3980 -3.4713 24 1 1.3828 -0.7180 3.3344 25 1 0.6217 0.5526 2.3197 26 1 2.8542 1.0350 3.9128 27 1 2.5347 1.9278 2.3927 28 1 5.4419 -1.2245 0.7540 29 1 4.2316 -2.5295 0.7437 30 1 4.2276 -1.3019 -0.5452 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = -62.100822 kcal Electronic energy + Delta-G solvation = -13119.913350 eV Core-core repulsion = 10914.037966 eV Total energy + Delta-G solvation = -2205.875384 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.36075 -38.01754 -35.33858 -33.74754 -32.31141 -27.55156 -27.34595 -27.13303 -23.57772 -21.22235 -20.17209 -18.44090 -17.48962 -17.13920 -16.46085 -16.19848 -14.98755 -14.63541 -14.57228 -14.11515 -13.74619 -13.60715 -13.10688 -12.97566 -12.82851 -12.61113 -12.23289 -12.16073 -12.07455 -11.81353 -11.26564 -10.81235 -10.64695 -10.41280 -9.36964 -8.08963 -6.15202 1.41079 1.43425 1.49896 1.67268 2.35177 2.44641 3.23565 3.57740 3.78960 4.14671 4.34299 4.51579 4.62557 4.72724 4.78296 4.88091 4.98128 5.04896 5.09782 5.19284 5.27839 5.44209 5.63822 5.71749 5.99237 6.06973 6.34619 6.46883 6.95555 7.29163 7.50338 8.99264 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040487 B = 0.012916 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.417221 B = 2167.405635 C = 2536.291900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.033 3.967 3 H -0.003 1.003 4 C -0.518 4.518 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.939 3.061 9 H -0.274 1.274 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.136 3.864 13 H 0.085 0.915 14 C -0.121 4.121 15 C -0.144 4.144 16 C 0.497 3.503 17 O -0.601 6.601 18 N -0.599 5.599 19 C 0.089 3.911 20 H 0.033 0.967 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.257 0.743 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -4.220 7.915 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.014 3.986 3 H 0.015 0.985 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.766 3.234 9 H -0.200 1.200 10 H -0.221 1.221 11 H -0.192 1.192 12 C 0.033 3.967 13 H 0.103 0.897 14 C -0.158 4.158 15 C -0.184 4.184 16 C 0.287 3.713 17 O -0.485 6.485 18 N -0.329 5.329 19 C -0.053 4.053 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.218 -4.044 7.836 8.902 hybrid contribution 0.364 -0.169 -1.508 1.561 sum -0.854 -4.213 6.328 7.650 Atomic orbital electron populations 1.21626 0.97118 0.99466 0.99821 1.18995 0.93327 0.94548 0.91776 0.98508 1.21581 1.34579 1.07908 0.91546 0.91733 1.25635 0.95791 0.95387 1.01714 1.70070 1.45925 1.16240 1.23847 0.85851 0.78882 0.78750 0.79883 1.19961 1.22107 1.19179 1.21990 0.77565 1.00770 0.96348 0.89657 1.22783 0.98109 0.98528 0.96398 1.22299 0.92661 1.00232 1.03175 1.21623 0.90352 0.79600 0.79759 1.90598 1.22608 1.67474 1.67808 1.48243 1.08567 1.37099 1.38946 1.21704 0.92698 0.94441 0.96495 0.94809 0.93842 0.93362 0.93422 0.87853 0.87892 0.86175 0.88338 0.91857 0.90586 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.72 71.98 0.63 -4.40 16 2 C 0.03 1.47 1.94 -11.54 -0.02 1.45 16 3 H 0.00 -0.17 8.10 -2.38 -0.02 -0.19 16 4 C -0.52 -26.09 7.05 25.60 0.18 -25.90 16 5 H 0.06 3.13 5.78 -2.91 -0.02 3.11 16 6 C 0.01 0.69 5.19 84.65 0.44 1.13 16 7 N -0.92 -52.31 12.07 21.45 0.26 -52.05 16 8 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 C 0.14 4.85 2.69 45.44 0.12 4.97 16 13 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 14 C -0.12 -3.24 6.52 31.65 0.21 -3.03 16 15 C -0.14 -4.26 6.86 30.59 0.21 -4.05 16 16 C 0.50 19.62 8.02 87.90 0.71 20.33 16 17 O -0.60 -27.82 17.35 -3.03 -0.05 -27.87 16 18 N -0.60 -23.17 2.92 -818.93 -2.39 -25.56 16 19 C 0.09 3.27 10.23 127.77 1.31 4.58 16 20 H 0.03 1.62 6.72 -2.39 -0.02 1.60 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.66 6.33 -2.39 -0.02 1.64 16 23 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.10 2.59 5.90 -2.39 -0.01 2.58 16 26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 28 H 0.06 2.33 7.53 -2.38 -0.02 2.31 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.72 5.66 -2.39 -0.01 2.71 16 Total: -1.00 -64.00 243.62 4.73 -59.27 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.12 Total: 6.79 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.78 Total: -4.93 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -2.14 Total: -77.62 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -64.00 4.73 -59.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.833 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds