Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47435 * 2 1 4 4 C 1.50705 * 109.47042 * 119.99910 * 2 1 3 5 5 H 1.07997 * 119.99760 * 119.99714 * 4 2 1 6 6 C 1.37881 * 119.99839 * 300.00463 * 4 2 1 7 7 N 1.31518 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00025 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47451 * 59.99186 * 8 6 4 10 10 H 1.48498 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46902 * 299.99582 * 8 6 4 12 12 C 1.52998 * 109.47097 * 239.99594 * 2 1 3 13 13 H 1.09004 * 110.28845 * 186.97678 * 12 2 1 14 14 C 1.54479 * 110.24549 * 65.00475 * 12 2 1 15 15 C 1.54623 * 101.76448 * 266.41353 * 14 12 2 16 16 C 1.51286 * 104.19583 * 335.20040 * 15 14 12 17 17 O 1.21283 * 124.94068 * 196.22850 * 16 15 14 18 18 N 1.34417 * 110.11517 * 16.49747 * 16 15 14 19 19 C 1.46497 * 124.35094 * 180.16242 * 18 16 15 20 20 H 1.09003 * 109.47064 * 300.00177 * 1 2 3 21 21 H 1.09004 * 109.46526 * 60.00068 * 1 2 3 22 22 H 1.09000 * 109.47435 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99499 * 180.02562 * 7 6 4 24 24 H 1.09006 * 110.97141 * 148.29400 * 14 12 2 25 25 H 1.09002 * 110.97085 * 24.53434 * 14 12 2 26 26 H 1.09000 * 110.48720 * 216.52574 * 15 14 12 27 27 H 1.09003 * 110.60041 * 93.93250 * 15 14 12 28 28 H 1.08998 * 109.46843 * 0.02562 * 19 18 16 29 29 H 1.09000 * 109.46978 * 120.02577 * 19 18 16 30 30 H 1.09003 * 109.47376 * 240.02366 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8276 -0.4191 5.2205 11 1 1.8278 -2.5197 4.0082 12 6 2.0400 -0.7213 -1.2492 13 1 3.1228 -0.8379 -1.2027 14 6 1.6408 0.0621 -2.5193 15 6 0.3110 -0.6243 -2.9082 16 6 0.4144 -2.0054 -2.2993 17 8 -0.2844 -2.9505 -2.5983 18 7 1.3896 -2.0310 -1.3745 19 6 1.7583 -3.2150 -0.5946 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7093 1.1618 3.4844 24 1 2.3873 -0.0606 -3.3041 25 1 1.4839 1.1170 -2.2938 26 1 0.2191 -0.6914 -3.9923 27 1 -0.5370 -0.0843 -2.4870 28 1 1.1237 -4.0527 -0.8839 29 1 2.8014 -3.4661 -0.7865 30 1 1.6240 -3.0071 0.4670 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260595420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -38.810536 kcal Electronic energy + Delta-G solvation = -13271.134289 eV Core-core repulsion = 11066.268848 eV Total energy + Delta-G solvation = -2204.865441 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99350 -36.35431 -33.36426 -32.25694 -30.14141 -26.57701 -25.99477 -25.01056 -21.68138 -19.91440 -18.38853 -16.45533 -15.98165 -15.65220 -14.68589 -14.44063 -13.58610 -13.19283 -12.78803 -12.23056 -12.12312 -12.04565 -11.63813 -11.26723 -11.07035 -10.97004 -10.80306 -10.54816 -10.09423 -9.93213 -9.62013 -9.16020 -8.82349 -8.42008 -7.76121 -6.04508 -4.11102 3.24344 3.27028 3.32715 3.34368 3.83808 4.37296 4.97785 5.12263 5.26799 5.39947 5.67609 5.95731 6.05590 6.08769 6.20707 6.28929 6.34431 6.54940 6.68950 6.83782 7.02996 7.16601 7.36724 7.62449 7.80694 7.96948 8.08521 8.36296 8.86249 8.89551 9.53106 11.01061 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046759 B = 0.012588 C = 0.011303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.668999 B = 2223.731872 C = 2476.706544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.036 3.964 3 H 0.038 0.962 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.135 3.865 13 H 0.074 0.926 14 C -0.129 4.129 15 C -0.155 4.155 16 C 0.514 3.486 17 O -0.565 6.565 18 N -0.591 5.591 19 C 0.092 3.908 20 H 0.081 0.919 21 H 0.012 0.988 22 H 0.026 0.974 23 H 0.261 0.739 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -0.905 -6.456 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 H 0.056 0.944 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.032 3.968 13 H 0.092 0.908 14 C -0.167 4.167 15 C -0.195 4.195 16 C 0.302 3.698 17 O -0.445 6.445 18 N -0.322 5.322 19 C -0.050 4.050 20 H 0.099 0.901 21 H 0.030 0.970 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.876 -1.342 -6.398 6.801 hybrid contribution 0.346 -0.415 1.072 1.200 sum 2.222 -1.757 -5.326 6.032 Atomic orbital electron populations 1.21914 0.98498 0.99141 1.00141 1.19048 0.93178 0.95619 0.90435 0.94448 1.21126 1.31245 1.12429 0.90416 0.92372 1.24942 0.95045 0.94950 0.98930 1.69871 1.36528 1.22809 1.23453 0.86720 0.79171 0.79857 0.82623 1.20286 1.21343 1.20301 1.22030 0.96751 0.81709 0.96289 0.90834 1.22649 0.95912 1.00716 0.97405 1.22418 1.00441 0.95071 1.01535 1.20806 0.79439 0.89876 0.79646 1.90628 1.46682 1.41288 1.65928 1.47975 1.35295 1.11545 1.37362 1.21643 0.99100 0.86430 0.97823 0.90067 0.96953 0.95503 0.92950 0.91329 0.89399 0.89522 0.87616 0.91548 0.93254 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 7.72 37.16 0.29 -2.95 16 2 C 0.04 0.83 2.05 -91.77 -0.19 0.64 16 3 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 4 C -0.51 -13.03 7.30 -34.44 -0.25 -13.28 16 5 H 0.06 1.43 5.97 -52.49 -0.31 1.12 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.14 2.57 3.03 -67.01 -0.20 2.37 16 13 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -1.98 6.30 -25.10 -0.16 -2.14 16 15 C -0.15 -2.51 6.06 -26.74 -0.16 -2.67 16 16 C 0.51 10.36 6.93 -10.86 -0.08 10.29 16 17 O -0.56 -13.05 17.35 5.55 0.10 -12.95 16 18 N -0.59 -11.66 2.26 -172.70 -0.39 -12.05 16 19 C 0.09 1.71 10.27 59.85 0.61 2.33 16 20 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 21 H 0.01 0.24 5.32 -51.93 -0.28 -0.04 16 22 H 0.03 0.64 6.91 -51.93 -0.36 0.28 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.29 7.86 -51.93 -0.41 0.88 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.11 1.72 6.10 -51.93 -0.32 1.40 16 28 H 0.07 1.21 7.53 -51.93 -0.39 0.82 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.70 5.98 -51.93 -0.31 1.39 16 LS Contribution 237.47 15.07 3.58 3.58 Total: -1.00 -29.24 237.47 -5.28 -34.51 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.94 Total: -0.89 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.23 Total: -3.85 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.24 Total: -35.93 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.10 Total: -12.95 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.24 -5.28 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.299 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds