Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47435 * 2 1 4 4 C 1.50705 * 109.47042 * 119.99910 * 2 1 3 5 5 H 1.07997 * 119.99760 * 119.99714 * 4 2 1 6 6 C 1.37881 * 119.99839 * 300.00463 * 4 2 1 7 7 N 1.31518 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00025 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47451 * 59.99186 * 8 6 4 10 10 H 1.48498 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46902 * 299.99582 * 8 6 4 12 12 C 1.52998 * 109.47097 * 239.99594 * 2 1 3 13 13 H 1.09004 * 110.28845 * 186.97678 * 12 2 1 14 14 C 1.54479 * 110.24549 * 65.00475 * 12 2 1 15 15 C 1.54623 * 101.76448 * 266.41353 * 14 12 2 16 16 C 1.51286 * 104.19583 * 335.20040 * 15 14 12 17 17 O 1.21283 * 124.94068 * 196.22850 * 16 15 14 18 18 N 1.34417 * 110.11517 * 16.49747 * 16 15 14 19 19 C 1.46497 * 124.35094 * 180.16242 * 18 16 15 20 20 H 1.09003 * 109.47064 * 300.00177 * 1 2 3 21 21 H 1.09004 * 109.46526 * 60.00068 * 1 2 3 22 22 H 1.09000 * 109.47435 * 179.97438 * 1 2 3 23 23 H 0.97004 * 119.99499 * 180.02562 * 7 6 4 24 24 H 1.09006 * 110.97141 * 148.29400 * 14 12 2 25 25 H 1.09002 * 110.97085 * 24.53434 * 14 12 2 26 26 H 1.09000 * 110.48720 * 216.52574 * 15 14 12 27 27 H 1.09003 * 110.60041 * 93.93250 * 15 14 12 28 28 H 1.08998 * 109.46843 * 0.02562 * 19 18 16 29 29 H 1.09000 * 109.46978 * 120.02577 * 19 18 16 30 30 H 1.09003 * 109.47376 * 240.02366 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8276 -0.4191 5.2205 11 1 1.8278 -2.5197 4.0082 12 6 2.0400 -0.7213 -1.2492 13 1 3.1228 -0.8379 -1.2027 14 6 1.6408 0.0621 -2.5193 15 6 0.3110 -0.6243 -2.9082 16 6 0.4144 -2.0054 -2.2993 17 8 -0.2844 -2.9505 -2.5983 18 7 1.3896 -2.0310 -1.3745 19 6 1.7583 -3.2150 -0.5946 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7093 1.1618 3.4844 24 1 2.3873 -0.0606 -3.3041 25 1 1.4839 1.1170 -2.2938 26 1 0.2191 -0.6914 -3.9923 27 1 -0.5370 -0.0843 -2.4870 28 1 1.1237 -4.0527 -0.8839 29 1 2.8014 -3.4661 -0.7865 30 1 1.6240 -3.0071 0.4670 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260595420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -56.642191 kcal Electronic energy + Delta-G solvation = -13271.907528 eV Core-core repulsion = 11066.268848 eV Total energy + Delta-G solvation = -2205.638680 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.52088 -38.01398 -35.24892 -33.69651 -31.96479 -28.17251 -27.48274 -26.92113 -23.23233 -21.55441 -19.94910 -18.32804 -17.55819 -17.26133 -16.36156 -16.15108 -15.15482 -14.80256 -14.42487 -13.93644 -13.73637 -13.64036 -13.06336 -12.97390 -12.74132 -12.60723 -12.47505 -12.23056 -12.00918 -11.63814 -11.29625 -10.74653 -10.67573 -10.41346 -9.36937 -8.04913 -6.15741 1.42467 1.44058 1.49458 1.69700 2.35492 2.44881 3.24057 3.58999 3.79754 4.17128 4.35022 4.51896 4.61518 4.71170 4.75314 4.87886 4.96174 5.03566 5.11878 5.23056 5.30153 5.40910 5.62193 5.71851 5.96705 6.14657 6.33903 6.48733 6.93449 7.31282 7.50835 8.99105 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046759 B = 0.012588 C = 0.011303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.668999 B = 2223.731872 C = 2476.706544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.033 3.967 3 H 0.022 0.978 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.942 3.058 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.276 1.276 12 C 0.135 3.865 13 H 0.083 0.917 14 C -0.116 4.116 15 C -0.148 4.148 16 C 0.503 3.497 17 O -0.601 6.601 18 N -0.596 5.596 19 C 0.091 3.909 20 H 0.048 0.952 21 H 0.040 0.960 22 H 0.008 0.992 23 H 0.257 0.743 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -0.834 -7.682 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 H 0.040 0.960 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.769 3.231 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.032 3.968 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.188 4.188 16 C 0.292 3.708 17 O -0.485 6.485 18 N -0.326 5.326 19 C -0.051 4.051 20 H 0.067 0.933 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.868 -1.269 -7.623 8.243 hybrid contribution 0.045 -0.456 1.456 1.527 sum 2.913 -1.725 -6.167 7.035 Atomic orbital electron populations 1.21728 0.98905 0.97740 0.99943 1.19028 0.92742 0.95038 0.91803 0.95991 1.21556 1.30452 1.12267 0.91437 0.91942 1.25637 0.95591 0.95705 1.01636 1.70002 1.37960 1.24220 1.23593 0.85858 0.79012 0.78684 0.79563 1.19357 1.21783 1.20203 1.21979 0.97047 0.81449 0.96298 0.89869 1.22670 0.96092 1.00445 0.96167 1.22446 1.00858 0.92279 1.03172 1.21516 0.78688 0.90977 0.79577 1.90602 1.47826 1.42937 1.67115 1.48165 1.35336 1.11928 1.37161 1.21645 1.00713 0.86331 0.96449 0.93278 0.94113 0.97297 0.93382 0.87961 0.88357 0.86490 0.87716 0.91736 0.90626 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 7.72 71.98 0.56 -5.22 16 2 C 0.03 1.48 2.05 -11.54 -0.02 1.46 16 3 H 0.02 1.06 8.09 -2.39 -0.02 1.04 16 4 C -0.52 -26.08 7.30 25.60 0.19 -25.90 16 5 H 0.06 3.02 5.97 -2.91 -0.02 3.00 16 6 C 0.01 0.67 5.30 84.66 0.45 1.11 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.06 16 8 Si 0.94 42.23 29.54 68.60 2.03 44.25 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.14 4.81 3.03 45.44 0.14 4.95 16 13 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 14 C -0.12 -3.10 6.30 31.65 0.20 -2.90 16 15 C -0.15 -4.30 6.06 30.59 0.19 -4.12 16 16 C 0.50 19.34 6.93 87.90 0.61 19.95 16 17 O -0.60 -27.26 17.35 -3.04 -0.05 -27.32 16 18 N -0.60 -22.49 2.26 -818.90 -1.85 -24.34 16 19 C 0.09 3.28 10.27 127.77 1.31 4.59 16 20 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 21 H 0.04 1.59 5.32 -2.38 -0.01 1.58 16 22 H 0.01 0.39 6.91 -2.39 -0.02 0.37 16 23 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 24 H 0.10 2.12 8.14 -2.38 -0.02 2.11 16 25 H 0.10 2.48 7.86 -2.39 -0.02 2.46 16 26 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.10 3.09 6.10 -2.39 -0.01 3.08 16 28 H 0.06 2.32 7.53 -2.39 -0.02 2.30 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.06 2.52 5.98 -2.39 -0.01 2.50 16 Total: -1.00 -62.53 237.47 5.11 -57.42 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.13 Total: 7.13 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 3.61 Total: -6.09 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.61 Total: -75.40 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -62.53 5.11 -57.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260595420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.779 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds