Wall clock time and date at job start Mon Mar 30 2020 01:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46960 * 2 1 4 4 C 1.52997 * 109.46902 * 119.99892 * 2 1 3 5 5 H 1.09002 * 110.86290 * 303.79068 * 4 2 1 6 6 C 1.54630 * 110.97035 * 67.62278 * 4 2 1 7 7 C 1.51276 * 104.19633 * 142.91616 * 6 4 2 8 8 O 1.21279 * 124.94498 * 163.77242 * 7 6 4 9 9 N 1.34561 * 110.14205 * 343.67098 * 7 6 4 10 10 C 1.46768 * 111.21663 * 359.71655 * 9 7 6 11 11 H 1.09001 * 110.24470 * 257.86258 * 10 9 7 12 12 C 1.50695 * 110.24948 * 135.94591 * 10 9 7 13 13 H 1.07999 * 120.00538 * 242.62828 * 12 10 9 14 14 C 1.37881 * 119.99661 * 62.63176 * 12 10 9 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46899 * 300.00229 * 1 2 3 22 22 H 1.08993 * 109.46779 * 59.99992 * 1 2 3 23 23 H 1.08998 * 109.46899 * 239.99771 * 2 1 3 24 24 H 1.09002 * 109.46514 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46891 * 299.99836 * 3 2 1 26 26 H 1.08997 * 109.47062 * 59.99851 * 3 2 1 27 27 H 1.09005 * 110.48602 * 261.58942 * 6 4 2 28 28 H 1.08994 * 110.49026 * 24.10268 * 6 4 2 29 29 H 0.97003 * 124.43888 * 179.64628 * 9 7 6 30 30 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6353 -0.2655 2.1530 6 6 1.7062 -2.2300 1.1922 7 6 2.9115 -2.9004 1.8138 8 8 2.9405 -4.0449 2.2138 9 7 3.9479 -2.0432 1.8564 10 6 3.5843 -0.7414 1.2843 11 1 3.9857 -0.6476 0.2752 12 6 4.1008 0.3740 2.1560 13 1 3.4083 1.0543 2.6294 14 6 5.4575 0.5262 2.3492 15 7 6.3008 -0.3025 1.7731 16 14 6.0978 1.9092 3.4292 17 1 6.2029 1.4337 4.8322 18 1 5.1621 3.0607 3.3657 19 1 7.4375 2.3330 2.9486 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 0.8089 -2.4444 1.7727 28 1 1.5776 -2.5535 0.1594 29 1 4.8218 -2.2567 2.2191 30 1 5.9682 -1.0209 1.2126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614366.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:57 Heat of formation + Delta-G solvation = -85.573149 kcal Electronic energy + Delta-G solvation = -13057.748946 eV Core-core repulsion = 10850.855726 eV Total energy + Delta-G solvation = -2206.893220 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.27726 -38.26243 -35.90066 -34.34520 -30.94243 -29.41551 -27.46096 -25.63851 -23.06318 -21.23545 -20.70124 -19.56531 -17.45468 -17.06884 -15.97997 -15.68619 -15.19198 -15.10184 -14.72134 -14.34021 -13.84827 -13.60081 -13.34950 -12.83045 -12.66354 -12.43328 -12.16239 -11.93826 -11.77186 -11.51008 -11.39112 -10.90870 -10.78741 -10.55563 -9.68835 -8.65130 -6.43910 1.56342 1.60055 1.68201 1.79267 2.53739 2.67419 3.25189 3.67772 3.74429 3.88757 4.25756 4.43843 4.56262 4.57681 4.85815 4.88688 4.92673 4.98214 5.14844 5.18098 5.35779 5.39885 5.61878 5.68367 5.79964 6.06273 6.14529 6.35306 6.59475 7.37424 7.38308 8.71315 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.014980 C = 0.010734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.851745 B = 1868.692435 C = 2608.001448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.072 4.072 5 H 0.077 0.923 6 C -0.137 4.137 7 C 0.493 3.507 8 O -0.613 6.613 9 N -0.717 5.717 10 C 0.234 3.766 11 H 0.017 0.983 12 C -0.596 4.596 13 H 0.062 0.938 14 C -0.020 4.020 15 N -0.933 5.933 16 Si 1.113 2.887 17 H -0.283 1.283 18 H -0.265 1.265 19 H -0.288 1.288 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.391 0.609 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 4.246 -3.531 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.196 4.196 4 C -0.091 4.091 5 H 0.095 0.905 6 C -0.176 4.176 7 C 0.281 3.719 8 O -0.498 6.498 9 N -0.367 5.367 10 C 0.133 3.867 11 H 0.035 0.965 12 C -0.635 4.635 13 H 0.080 0.920 14 C -0.221 4.221 15 N -0.571 5.571 16 Si 0.936 3.064 17 H -0.209 1.209 18 H -0.189 1.189 19 H -0.214 1.214 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.228 0.772 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.614 4.430 -2.820 10.089 hybrid contribution -0.386 -1.051 -0.318 1.164 sum -9.000 3.379 -3.139 10.112 Atomic orbital electron populations 1.21807 0.93123 1.02379 1.02338 1.21014 0.96902 0.96114 0.95477 1.21755 1.00983 0.95613 1.01243 1.22156 0.93818 0.93200 0.99929 0.90458 1.22404 0.96054 0.95842 1.03349 1.21805 0.87710 0.84701 0.77712 1.90596 1.85643 1.19712 1.53873 1.47580 1.13642 1.15825 1.59701 1.19616 0.93191 0.80652 0.93272 0.96490 1.22443 0.94410 1.13991 1.32659 0.91971 1.27158 0.94493 1.02163 0.98243 1.70957 1.38211 1.17452 1.30509 0.82957 0.75660 0.73404 0.74416 1.20898 1.18925 1.21382 0.91841 0.92586 0.91359 0.91551 0.93954 0.91775 0.93183 0.87113 0.86618 0.77203 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.05 71.99 0.65 -2.35 16 2 C -0.08 -2.18 2.28 -10.79 -0.02 -2.21 16 3 C -0.14 -4.21 8.59 71.98 0.62 -3.59 16 4 C -0.07 -2.53 2.20 -9.74 -0.02 -2.55 16 5 H 0.08 2.81 7.78 -2.39 -0.02 2.79 16 6 C -0.14 -4.59 5.64 30.59 0.17 -4.42 16 7 C 0.49 22.04 8.43 87.87 0.74 22.78 16 8 O -0.61 -31.22 18.03 -3.03 -0.05 -31.27 16 9 N -0.72 -34.09 5.38 -442.78 -2.38 -36.48 16 10 C 0.23 10.54 1.79 44.70 0.08 10.62 16 11 H 0.02 0.84 7.55 -2.39 -0.02 0.83 16 12 C -0.60 -29.60 7.42 25.60 0.19 -29.41 16 13 H 0.06 3.03 7.61 -2.91 -0.02 3.00 16 14 C -0.02 -1.06 5.39 84.65 0.46 -0.60 16 15 N -0.93 -52.72 13.22 21.45 0.28 -52.44 16 16 Si 1.11 46.95 29.90 68.60 2.05 49.00 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 19 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 20 H 0.06 1.23 7.55 -2.39 -0.02 1.22 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 24 H 0.04 1.56 6.49 -2.39 -0.02 1.55 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 28 H 0.12 3.34 7.84 -2.39 -0.02 3.32 16 29 H 0.39 20.11 7.53 -92.71 -0.70 19.41 16 30 H 0.26 14.77 6.06 -92.71 -0.56 14.21 16 Total: -1.00 -61.48 245.82 3.39 -58.08 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.63 Total: 24.83 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 2.86 Total: -11.73 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -2.10 Total: -88.92 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.27 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.05 Total: 49.00 kcal Total: -61.48 3.39 -58.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614366.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.492 kcal (2) G-P(sol) polarization free energy of solvation -61.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds