Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47337 * 119.99811 * 2 1 3 5 5 H 1.09001 * 110.85737 * 301.62970 * 4 2 1 6 6 C 1.54632 * 110.96816 * 177.79599 * 4 2 1 7 7 C 1.51282 * 104.19337 * 217.08292 * 6 4 2 8 8 O 1.21280 * 124.94394 * 196.25248 * 7 6 4 9 9 N 1.34419 * 110.11796 * 16.25464 * 7 6 4 10 10 C 1.46770 * 111.29883 * 0.40789 * 9 7 6 11 11 H 1.09002 * 110.24509 * 223.98347 * 10 9 7 12 12 C 1.50699 * 110.24938 * 101.98379 * 10 9 7 13 13 H 1.08000 * 119.99644 * 279.23094 * 12 10 9 14 14 C 1.37872 * 119.99835 * 99.22369 * 12 10 9 15 15 N 1.31512 * 120.00500 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99829 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46819 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46865 * 119.99989 * 16 14 12 19 19 H 1.48495 * 109.47262 * 240.00100 * 16 14 12 20 20 H 1.09000 * 109.46930 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47376 * 299.99744 * 1 2 3 22 22 H 1.08997 * 109.47306 * 60.00351 * 1 2 3 23 23 H 1.08996 * 109.47376 * 240.00256 * 2 1 3 24 24 H 1.09004 * 109.47267 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47255 * 300.00289 * 3 2 1 26 26 H 1.09005 * 109.47130 * 59.99906 * 3 2 1 27 27 H 1.08995 * 110.48926 * 335.75979 * 6 4 2 28 28 H 1.08999 * 110.48676 * 98.40926 * 6 4 2 29 29 H 0.97000 * 124.35742 * 180.42823 * 9 7 6 30 30 H 0.97000 * 120.00451 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6658 -0.2421 2.1540 6 6 3.5848 -0.7896 1.2567 7 6 3.8931 -2.1478 1.8474 8 8 4.9726 -2.4867 2.2840 9 7 2.7964 -2.9245 1.8180 10 6 1.6585 -2.2178 1.2180 11 1 0.7560 -2.3894 1.8047 12 6 1.4521 -2.6738 -0.2035 13 1 2.0633 -2.2665 -0.9953 14 6 0.4833 -3.6111 -0.4929 15 7 -0.2611 -4.1068 0.4712 16 14 0.2280 -4.1769 -2.2549 17 1 1.1863 -3.4730 -3.1445 18 1 0.4562 -5.6416 -2.3423 19 1 -1.1610 -3.8662 -2.6782 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9564 -0.8899 26 1 1.6765 1.9564 0.8900 27 1 3.9748 -0.7178 0.2415 28 1 3.9987 0.0012 1.8823 29 1 2.7613 -3.8349 2.1509 30 1 -0.9429 -4.7660 0.2675 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614376.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = -77.889465 kcal Electronic energy + Delta-G solvation = -13138.631420 eV Core-core repulsion = 10932.071389 eV Total energy + Delta-G solvation = -2206.560031 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.11246 -38.14211 -35.34745 -34.41878 -30.82187 -29.37136 -27.37042 -25.87819 -22.90895 -21.09059 -20.64039 -18.26343 -18.12063 -16.62897 -16.18848 -15.83376 -15.13630 -14.59418 -14.46593 -14.28236 -13.78125 -13.48218 -12.92143 -12.88526 -12.75028 -12.53629 -12.26011 -12.00561 -11.64859 -11.46597 -11.05267 -10.80648 -10.67139 -10.52012 -9.60983 -8.15390 -6.28126 1.39446 1.46098 1.53867 1.85475 2.41477 2.80538 3.30695 3.86855 3.93262 4.17124 4.47352 4.64433 4.70590 4.75528 5.02426 5.06259 5.09002 5.17584 5.29110 5.36594 5.46727 5.56282 5.68628 5.86931 5.91811 6.21222 6.27007 6.53448 6.87414 7.40168 7.59853 8.88582 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028287 B = 0.016140 C = 0.011975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.629366 B = 1734.434075 C = 2337.723934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.080 4.080 5 H 0.077 0.923 6 C -0.132 4.132 7 C 0.498 3.502 8 O -0.620 6.620 9 N -0.710 5.710 10 C 0.237 3.763 11 H 0.049 0.951 12 C -0.509 4.509 13 H 0.062 0.938 14 C 0.034 3.966 15 N -0.915 5.915 16 Si 0.941 3.059 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.278 1.278 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.390 0.610 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 8.628 -1.871 8.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C -0.200 4.200 4 C -0.100 4.100 5 H 0.095 0.905 6 C -0.171 4.171 7 C 0.286 3.714 8 O -0.505 6.505 9 N -0.359 5.359 10 C 0.136 3.864 11 H 0.067 0.933 12 C -0.548 4.548 13 H 0.080 0.920 14 C -0.168 4.168 15 N -0.554 5.554 16 Si 0.768 3.232 17 H -0.190 1.190 18 H -0.217 1.217 19 H -0.204 1.204 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.226 0.774 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.277 8.476 -1.670 8.643 hybrid contribution -0.390 -1.395 -0.606 1.570 sum -0.113 7.081 -2.276 7.438 Atomic orbital electron populations 1.21726 0.95647 1.01684 1.00474 1.20892 0.95754 0.95137 0.96757 1.21879 1.01061 0.95149 1.01933 1.22178 0.92821 0.95687 0.99286 0.90472 1.22280 0.98007 0.93974 1.02860 1.21542 0.82981 0.89591 0.77326 1.90587 1.27068 1.80161 1.52715 1.47406 1.13415 1.16108 1.58933 1.19603 0.85113 0.88485 0.93222 0.93304 1.21449 1.17373 1.22792 0.93218 0.92020 1.25605 0.95476 0.95742 0.99970 1.69993 1.22200 1.29861 1.33308 0.85766 0.78200 0.77709 0.81573 1.18951 1.21676 1.20384 0.93406 0.93288 0.92913 0.91458 0.92334 0.92219 0.92344 0.87973 0.87473 0.77440 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.89 71.98 0.64 -3.93 16 2 C -0.07 -2.14 1.87 -10.79 -0.02 -2.16 16 3 C -0.14 -3.48 9.00 71.98 0.65 -2.84 16 4 C -0.08 -2.84 2.58 -9.74 -0.03 -2.86 16 5 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 6 C -0.13 -4.55 5.40 30.59 0.17 -4.38 16 7 C 0.50 21.72 8.43 87.90 0.74 22.46 16 8 O -0.62 -30.80 18.03 -3.03 -0.05 -30.86 16 9 N -0.71 -31.67 5.86 -442.96 -2.60 -34.27 16 10 C 0.24 10.45 3.04 44.70 0.14 10.59 16 11 H 0.05 2.42 7.29 -2.39 -0.02 2.40 16 12 C -0.51 -24.22 6.03 25.60 0.15 -24.06 16 13 H 0.06 2.93 6.30 -2.91 -0.02 2.92 16 14 C 0.03 1.67 5.24 84.65 0.44 2.11 16 15 N -0.91 -48.16 12.79 21.44 0.27 -47.88 16 16 Si 0.94 40.30 29.54 68.60 2.03 42.33 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 18 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 H 0.05 1.94 6.23 -2.39 -0.01 1.93 16 21 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 2.41 5.96 -2.39 -0.01 2.40 16 24 H 0.06 1.33 7.31 -2.38 -0.02 1.31 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.10 3.39 7.82 -2.39 -0.02 3.37 16 28 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.39 17.59 8.96 -92.71 -0.83 16.76 16 30 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -57.03 245.06 2.83 -54.20 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.30 Total: 21.55 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 2.88 Total: -5.07 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.32 Total: -82.16 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.05 Total: -30.86 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -57.03 2.83 -54.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614376.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.689 kcal (2) G-P(sol) polarization free energy of solvation -57.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds