Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47420 * 2 1 4 4 C 1.52997 * 109.47260 * 120.00178 * 2 1 3 5 5 H 1.08998 * 110.88409 * 298.39477 * 4 2 1 6 6 C 1.54628 * 110.97196 * 62.20810 * 4 2 1 7 7 C 1.51283 * 104.19345 * 142.91606 * 6 4 2 8 8 O 1.21283 * 124.93790 * 163.78452 * 7 6 4 9 9 N 1.34416 * 110.12162 * 343.74734 * 7 6 4 10 10 C 1.46769 * 111.29648 * 359.59285 * 9 7 6 11 11 H 1.09001 * 110.31568 * 136.05434 * 10 9 7 12 12 C 1.50691 * 110.24803 * 258.01381 * 10 9 7 13 13 H 1.07998 * 120.00382 * 80.77073 * 12 10 9 14 14 C 1.37879 * 119.99804 * 261.05251 * 12 10 9 15 15 N 1.31512 * 120.00433 * 359.72206 * 14 12 10 16 16 Si 1.86805 * 119.99818 * 179.72469 * 14 12 10 17 17 H 1.48492 * 109.47342 * 89.99938 * 16 14 12 18 18 H 1.48498 * 109.46961 * 209.99987 * 16 14 12 19 19 H 1.48507 * 109.47171 * 329.99598 * 16 14 12 20 20 H 1.08998 * 109.47471 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46835 * 299.99862 * 1 2 3 22 22 H 1.08995 * 109.47334 * 59.99581 * 1 2 3 23 23 H 1.09000 * 109.46835 * 240.00138 * 2 1 3 24 24 H 1.08993 * 109.47536 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.46940 * 300.00529 * 3 2 1 26 26 H 1.08996 * 109.46982 * 59.99752 * 3 2 1 27 27 H 1.09000 * 110.48808 * 261.59397 * 6 4 2 28 28 H 1.09000 * 110.48195 * 24.24356 * 6 4 2 29 29 H 0.96994 * 124.35265 * 179.59129 * 9 7 6 30 30 H 0.96993 * 120.00475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7129 -0.2093 2.1542 6 6 1.5898 -2.2005 1.2567 7 6 2.7676 -2.9438 1.8474 8 8 2.7274 -4.0748 2.2833 9 7 3.8654 -2.1686 1.8179 10 6 3.5782 -0.8603 1.2179 11 1 4.0408 -0.0657 1.8034 12 6 4.0769 -0.8177 -0.2034 13 1 3.4893 -1.2580 -0.9954 14 6 5.2862 -0.2215 -0.4921 15 7 6.0019 0.3147 0.4722 16 14 5.9080 -0.1754 -2.2530 17 1 5.4223 1.0606 -2.9173 18 1 7.3929 -0.1871 -2.2540 19 1 5.4032 -1.3633 -2.9875 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 0.7062 -2.3272 1.8823 28 1 1.3921 -2.5442 0.2414 29 1 4.7355 -2.4391 2.1505 30 1 6.8527 0.7338 0.2692 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = -77.853487 kcal Electronic energy + Delta-G solvation = -13138.221210 eV Core-core repulsion = 10931.662739 eV Total energy + Delta-G solvation = -2206.558471 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11235 -38.14148 -35.34832 -34.41719 -30.82243 -29.37128 -27.37095 -25.87578 -22.90788 -21.09125 -20.64030 -18.26066 -18.12092 -16.62840 -16.18892 -15.83387 -15.13921 -14.59445 -14.46453 -14.27425 -13.78412 -13.48378 -12.93383 -12.85460 -12.73385 -12.53111 -12.27938 -12.03822 -11.65089 -11.46655 -11.05025 -10.80357 -10.66405 -10.51804 -9.61150 -8.15169 -6.28011 1.41011 1.46086 1.52566 1.85469 2.41600 2.80610 3.30774 3.86879 3.93218 4.17125 4.47341 4.64471 4.70550 4.75510 5.02408 5.06226 5.08905 5.17544 5.29115 5.36658 5.46710 5.56261 5.68477 5.86833 5.91831 6.21273 6.27125 6.53437 6.87266 7.40233 7.59851 8.88578 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.016143 C = 0.011974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.438269 B = 1734.118208 C = 2337.800609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.080 4.080 5 H 0.077 0.923 6 C -0.132 4.132 7 C 0.498 3.502 8 O -0.620 6.620 9 N -0.710 5.710 10 C 0.237 3.763 11 H 0.049 0.951 12 C -0.511 4.511 13 H 0.061 0.939 14 C 0.034 3.966 15 N -0.915 5.915 16 Si 0.941 3.059 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.273 1.273 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.390 0.610 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 2.961 -1.872 8.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C -0.195 4.195 4 C -0.100 4.100 5 H 0.095 0.905 6 C -0.171 4.171 7 C 0.285 3.715 8 O -0.505 6.505 9 N -0.359 5.359 10 C 0.136 3.864 11 H 0.067 0.933 12 C -0.549 4.549 13 H 0.079 0.921 14 C -0.168 4.168 15 N -0.553 5.553 16 Si 0.768 3.232 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.198 1.198 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.226 0.774 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.058 2.591 -1.669 8.627 hybrid contribution 1.433 -0.108 -0.613 1.562 sum -6.625 2.483 -2.283 7.434 Atomic orbital electron populations 1.21877 0.94319 1.01896 1.01933 1.20892 0.94941 0.95928 0.96764 1.21726 1.01632 0.95704 1.00449 1.22176 0.94935 0.93564 0.99286 0.90476 1.22282 0.96227 0.95759 1.02860 1.21544 0.87694 0.84891 0.77322 1.90588 1.86811 1.20407 1.52741 1.47405 1.10692 1.18823 1.58934 1.19592 0.92500 0.81095 0.93215 0.93293 1.21419 1.04173 1.36131 0.93226 0.92054 1.25608 0.96770 0.94424 0.99972 1.69984 1.13852 1.38143 1.33354 0.85814 0.77132 0.78790 0.81503 1.19447 1.21741 1.19764 0.92323 0.92358 0.92210 0.91432 0.93415 0.92967 0.93279 0.87470 0.87971 0.77444 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.00 71.98 0.65 -2.83 16 2 C -0.07 -2.13 1.87 -10.79 -0.02 -2.15 16 3 C -0.14 -4.57 8.89 71.98 0.64 -3.93 16 4 C -0.08 -2.83 2.58 -9.74 -0.03 -2.86 16 5 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 6 C -0.13 -4.55 5.40 30.59 0.17 -4.39 16 7 C 0.50 21.74 8.43 87.90 0.74 22.48 16 8 O -0.62 -30.84 18.03 -3.04 -0.05 -30.90 16 9 N -0.71 -31.70 5.86 -442.97 -2.60 -34.30 16 10 C 0.24 10.46 3.04 44.70 0.14 10.60 16 11 H 0.05 2.43 7.29 -2.39 -0.02 2.41 16 12 C -0.51 -24.28 6.03 25.60 0.15 -24.13 16 13 H 0.06 2.91 6.30 -2.91 -0.02 2.90 16 14 C 0.03 1.68 5.25 84.66 0.44 2.13 16 15 N -0.91 -48.16 12.79 21.45 0.27 -47.88 16 16 Si 0.94 40.29 29.54 68.60 2.03 42.32 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 H 0.06 1.33 7.31 -2.39 -0.02 1.31 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 2.41 5.97 -2.39 -0.01 2.40 16 24 H 0.05 1.94 6.24 -2.39 -0.01 1.93 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.10 3.39 7.82 -2.39 -0.02 3.37 16 29 H 0.39 17.60 8.96 -92.71 -0.83 16.77 16 30 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -57.03 245.08 2.83 -54.19 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.30 Total: 21.65 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 2.88 Total: -5.08 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -2.32 Total: -82.18 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -57.03 2.83 -54.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.659 kcal (2) G-P(sol) polarization free energy of solvation -57.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds