Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47005 * 2 1 4 4 C 1.53003 * 109.47221 * 119.99427 * 2 1 3 5 5 H 1.09000 * 110.88295 * 302.36305 * 4 2 1 6 6 C 1.54627 * 110.97138 * 178.54713 * 4 2 1 7 7 C 1.51283 * 104.19534 * 266.68395 * 6 4 2 8 8 O 1.21277 * 124.93853 * 163.78712 * 7 6 4 9 9 N 1.34417 * 110.11678 * 343.74279 * 7 6 4 10 10 C 1.46769 * 111.30165 * 359.59726 * 9 7 6 11 11 H 1.08997 * 110.24528 * 136.00848 * 10 9 7 12 12 C 1.50693 * 110.24650 * 258.01553 * 10 9 7 13 13 H 1.07997 * 120.00220 * 116.04591 * 12 10 9 14 14 C 1.37883 * 119.99820 * 296.04418 * 12 10 9 15 15 N 1.31518 * 119.99809 * 179.97438 * 14 12 10 16 16 Si 1.86799 * 120.00027 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47114 * 89.99513 * 16 14 12 18 18 H 1.48500 * 109.46885 * 209.99905 * 16 14 12 19 19 H 1.48503 * 109.47050 * 329.99749 * 16 14 12 20 20 H 1.08999 * 109.47446 * 300.00232 * 1 2 3 21 21 H 1.08997 * 109.47205 * 60.00572 * 1 2 3 22 22 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47446 * 239.99768 * 2 1 3 24 24 H 1.09005 * 109.46536 * 299.99478 * 3 2 1 25 25 H 1.08999 * 109.47208 * 59.99622 * 3 2 1 26 26 H 1.08993 * 109.46780 * 179.97438 * 3 2 1 27 27 H 1.09005 * 110.48027 * 25.35881 * 6 4 2 28 28 H 1.08997 * 110.48427 * 147.87007 * 6 4 2 29 29 H 0.97000 * 124.35169 * 179.57396 * 9 7 6 30 30 H 0.96998 * 119.99698 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6556 -0.2501 2.1540 6 6 3.5854 -0.7731 1.2662 7 6 3.9189 -2.1012 0.6231 8 8 5.0097 -2.4097 0.1921 9 7 2.8306 -2.8898 0.5997 10 6 1.6748 -2.2216 1.2093 11 1 0.7846 -2.3770 0.5998 12 6 1.4491 -2.7408 2.6059 13 1 1.5523 -2.0774 3.4518 14 6 1.1109 -4.0628 2.8037 15 7 0.9144 -4.5160 4.0225 16 14 0.9332 -5.2104 1.3405 17 1 2.2426 -5.8470 1.0488 18 1 -0.0690 -6.2604 1.6539 19 1 0.4845 -4.4358 0.1555 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4425 0.0005 27 1 4.0010 0.0484 0.6827 28 1 3.9570 -0.7388 2.2903 29 1 2.8115 -3.7853 0.2274 30 1 0.6761 -5.4459 4.1616 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614396.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -54.821425 kcal Electronic energy + Delta-G solvation = -13102.069609 eV Core-core repulsion = 10896.509884 eV Total energy + Delta-G solvation = -2205.559726 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70321 -36.51807 -34.18482 -32.36781 -29.64183 -28.20191 -26.58761 -24.04037 -21.17882 -19.77820 -19.32452 -16.96552 -16.53922 -15.05811 -14.67767 -14.22235 -13.84007 -13.45183 -13.31883 -12.63066 -12.17535 -11.99787 -11.82445 -11.71027 -11.36745 -11.05200 -10.99472 -10.61361 -10.31328 -9.90824 -9.88554 -9.51431 -9.00125 -8.81623 -7.91076 -6.30460 -4.35800 3.12041 3.15767 3.21272 3.50340 4.19814 4.36497 5.04108 5.11457 5.14044 5.28627 5.47981 5.74722 5.82336 5.91132 5.93527 6.12292 6.18860 6.24931 6.32776 6.49415 6.52284 6.58201 6.86069 6.90579 7.42872 7.77626 7.99568 8.26291 8.74720 9.16619 9.30708 10.81408 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.014934 C = 0.012529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.810902 B = 1874.419193 C = 2234.347034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.081 4.081 5 H 0.093 0.907 6 C -0.145 4.145 7 C 0.517 3.483 8 O -0.578 6.578 9 N -0.720 5.720 10 C 0.216 3.784 11 H 0.054 0.946 12 C -0.526 4.526 13 H 0.083 0.917 14 C 0.082 3.918 15 N -0.884 5.884 16 Si 0.867 3.133 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.261 1.261 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.386 0.614 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 7.891 -6.760 10.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.100 4.100 5 H 0.111 0.889 6 C -0.185 4.185 7 C 0.304 3.696 8 O -0.460 6.460 9 N -0.374 5.374 10 C 0.115 3.885 11 H 0.072 0.928 12 C -0.565 4.565 13 H 0.101 0.899 14 C -0.123 4.123 15 N -0.521 5.521 16 Si 0.694 3.306 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.186 1.186 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.224 0.776 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.127 7.703 -6.805 10.340 hybrid contribution -0.155 -1.303 -0.665 1.471 sum -1.282 6.400 -7.471 9.921 Atomic orbital electron populations 1.21835 0.95094 1.02288 1.01042 1.21123 0.95974 0.95656 0.98228 1.21885 1.00996 0.96209 1.01304 1.22134 0.93436 0.96342 0.98077 0.88876 1.22337 0.97545 0.96033 1.02547 1.20880 0.83553 0.87575 0.77570 1.90623 1.24667 1.79212 1.51512 1.47549 1.13351 1.17318 1.59211 1.20020 0.85080 0.88723 0.94631 0.92829 1.21298 1.47581 0.96331 0.91285 0.89935 1.25025 0.93656 0.98108 0.95515 1.69887 1.45810 1.15995 1.20364 0.87067 0.78549 0.81338 0.83643 1.19907 1.21090 1.18574 0.92458 0.93502 0.92019 0.91761 0.93242 0.92594 0.92589 0.89401 0.88354 0.77625 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.03 37.16 0.34 -1.68 16 2 C -0.09 -1.35 2.49 -90.61 -0.23 -1.58 16 3 C -0.15 -1.80 8.98 37.16 0.33 -1.47 16 4 C -0.08 -1.43 2.18 -88.98 -0.19 -1.63 16 5 H 0.09 1.64 7.73 -51.93 -0.40 1.24 16 6 C -0.14 -2.62 6.25 -26.74 -0.17 -2.79 16 7 C 0.52 11.42 8.43 -10.86 -0.09 11.33 16 8 O -0.58 -14.38 18.03 5.56 0.10 -14.28 16 9 N -0.72 -15.94 5.20 -53.88 -0.28 -16.22 16 10 C 0.22 4.64 2.20 -68.16 -0.15 4.49 16 11 H 0.05 1.14 5.17 -51.93 -0.27 0.87 16 12 C -0.53 -13.58 9.31 -34.44 -0.32 -13.90 16 13 H 0.08 2.29 7.82 -52.49 -0.41 1.88 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 15 N -0.88 -25.62 13.96 55.43 0.77 -24.85 16 16 Si 0.87 20.16 25.17 -169.99 -4.28 15.88 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.26 -5.66 6.49 56.52 0.37 -5.29 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.93 6.47 -51.93 -0.34 0.60 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.68 6.22 -51.93 -0.32 0.35 16 27 H 0.09 1.38 5.94 -51.93 -0.31 1.07 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.39 8.53 6.42 -40.82 -0.26 8.27 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 240.32 15.07 3.62 3.62 Total: -1.00 -29.81 240.32 -4.66 -34.46 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.02 Total: 6.47 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.58 Total: -5.09 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.49 Total: -41.07 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.10 Total: -14.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.28 Total: 15.88 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.81 -4.66 -34.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614396.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.357 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds