Wall clock time and date at job start Mon Mar 30 2020 01:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47005 * 2 1 4 4 C 1.53003 * 109.47221 * 119.99427 * 2 1 3 5 5 H 1.09000 * 110.88295 * 302.36305 * 4 2 1 6 6 C 1.54627 * 110.97138 * 178.54713 * 4 2 1 7 7 C 1.51283 * 104.19534 * 266.68395 * 6 4 2 8 8 O 1.21277 * 124.93853 * 163.78712 * 7 6 4 9 9 N 1.34417 * 110.11678 * 343.74279 * 7 6 4 10 10 C 1.46769 * 111.30165 * 359.59726 * 9 7 6 11 11 H 1.08997 * 110.24528 * 136.00848 * 10 9 7 12 12 C 1.50693 * 110.24650 * 258.01553 * 10 9 7 13 13 H 1.07997 * 120.00220 * 116.04591 * 12 10 9 14 14 C 1.37883 * 119.99820 * 296.04418 * 12 10 9 15 15 N 1.31518 * 119.99809 * 179.97438 * 14 12 10 16 16 Si 1.86799 * 120.00027 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47114 * 89.99513 * 16 14 12 18 18 H 1.48500 * 109.46885 * 209.99905 * 16 14 12 19 19 H 1.48503 * 109.47050 * 329.99749 * 16 14 12 20 20 H 1.08999 * 109.47446 * 300.00232 * 1 2 3 21 21 H 1.08997 * 109.47205 * 60.00572 * 1 2 3 22 22 H 1.09006 * 109.46885 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47446 * 239.99768 * 2 1 3 24 24 H 1.09005 * 109.46536 * 299.99478 * 3 2 1 25 25 H 1.08999 * 109.47208 * 59.99622 * 3 2 1 26 26 H 1.08993 * 109.46780 * 179.97438 * 3 2 1 27 27 H 1.09005 * 110.48027 * 25.35881 * 6 4 2 28 28 H 1.08997 * 110.48427 * 147.87007 * 6 4 2 29 29 H 0.97000 * 124.35169 * 179.57396 * 9 7 6 30 30 H 0.96998 * 119.99698 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 1 1.6556 -0.2501 2.1540 6 6 3.5854 -0.7731 1.2662 7 6 3.9189 -2.1012 0.6231 8 8 5.0097 -2.4097 0.1921 9 7 2.8306 -2.8898 0.5997 10 6 1.6748 -2.2216 1.2093 11 1 0.7846 -2.3770 0.5998 12 6 1.4491 -2.7408 2.6059 13 1 1.5523 -2.0774 3.4518 14 6 1.1109 -4.0628 2.8037 15 7 0.9144 -4.5160 4.0225 16 14 0.9332 -5.2104 1.3405 17 1 2.2426 -5.8470 1.0488 18 1 -0.0690 -6.2604 1.6539 19 1 0.4845 -4.4358 0.1555 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4425 0.0005 27 1 4.0010 0.0484 0.6827 28 1 3.9570 -0.7388 2.2903 29 1 2.8115 -3.7853 0.2274 30 1 0.6761 -5.4459 4.1616 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614396.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:03 Heat of formation + Delta-G solvation = -75.883536 kcal Electronic energy + Delta-G solvation = -13102.982931 eV Core-core repulsion = 10896.509884 eV Total energy + Delta-G solvation = -2206.473047 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.36371 -38.16154 -35.70026 -34.36494 -31.11567 -29.96032 -27.76078 -25.69491 -22.74038 -21.48962 -20.72454 -18.88821 -18.29940 -16.73140 -16.32653 -15.84988 -15.38326 -14.97075 -14.82738 -14.43549 -13.61020 -13.57266 -13.21342 -12.89747 -12.85573 -12.66695 -12.44020 -12.12355 -11.81899 -11.51286 -11.25487 -11.07217 -10.91778 -10.72169 -9.74747 -8.38691 -6.47654 1.26265 1.28367 1.34816 1.74795 2.23798 2.58132 3.14313 3.70825 3.73896 3.94343 4.20830 4.41488 4.59762 4.69496 4.85082 4.89770 4.96298 5.02995 5.10435 5.17696 5.26856 5.39117 5.51529 5.62893 5.66698 6.02055 6.11971 6.30666 6.66237 7.22764 7.39800 8.76347 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.014934 C = 0.012529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.810902 B = 1874.419193 C = 2234.347034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.073 4.073 5 H 0.093 0.907 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.608 6.608 9 N -0.723 5.723 10 C 0.216 3.784 11 H 0.064 0.936 12 C -0.525 4.525 13 H 0.051 0.949 14 C 0.026 3.974 15 N -0.934 5.934 16 Si 0.920 3.080 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.233 1.233 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.385 0.615 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 9.268 -8.569 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.092 4.092 5 H 0.111 0.889 6 C -0.177 4.177 7 C 0.298 3.702 8 O -0.492 6.492 9 N -0.376 5.376 10 C 0.115 3.885 11 H 0.082 0.918 12 C -0.564 4.564 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.573 5.573 16 Si 0.745 3.255 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.156 1.156 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.222 0.778 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.416 9.106 -8.627 12.623 hybrid contribution -0.054 -1.696 -0.048 1.697 sum -1.470 7.410 -8.675 11.503 Atomic orbital electron populations 1.21838 0.94381 1.01595 1.02430 1.21108 0.96570 0.96929 0.96008 1.21853 1.01149 0.94325 1.02658 1.22123 0.93099 0.93971 0.99958 0.88872 1.22381 0.97941 0.94755 1.02638 1.21508 0.82883 0.88798 0.77007 1.90602 1.25708 1.80110 1.52812 1.47516 1.13660 1.17462 1.58984 1.20010 0.85282 0.91114 0.92095 0.91835 1.21580 1.46281 0.95795 0.92725 0.93051 1.25830 0.93709 0.99980 0.97887 1.70025 1.48117 1.16434 1.22688 0.86184 0.78359 0.79527 0.81451 1.20048 1.21194 1.15588 0.92116 0.91163 0.93709 0.92284 0.91385 0.91842 0.92302 0.86319 0.88320 0.77800 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.03 71.98 0.65 -2.93 16 2 C -0.09 -2.31 2.49 -10.79 -0.03 -2.33 16 3 C -0.14 -2.92 8.98 71.98 0.65 -2.27 16 4 C -0.07 -2.41 2.18 -9.73 -0.02 -2.43 16 5 H 0.09 3.13 7.73 -2.39 -0.02 3.11 16 6 C -0.14 -4.68 6.25 30.59 0.19 -4.49 16 7 C 0.51 21.74 8.43 87.90 0.74 22.48 16 8 O -0.61 -29.58 18.03 -3.02 -0.05 -29.63 16 9 N -0.72 -30.96 5.20 -442.97 -2.30 -33.27 16 10 C 0.22 8.98 2.20 44.70 0.10 9.08 16 11 H 0.06 2.56 5.17 -2.39 -0.01 2.55 16 12 C -0.52 -27.21 9.31 25.60 0.24 -26.97 16 13 H 0.05 2.92 7.82 -2.91 -0.02 2.90 16 14 C 0.03 1.43 5.47 84.66 0.46 1.90 16 15 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 16 Si 0.92 41.17 25.17 68.60 1.73 42.89 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.23 -9.25 6.49 99.48 0.65 -8.61 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.24 6.47 -2.38 -0.02 1.23 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.17 6.22 -2.39 -0.01 1.16 16 27 H 0.12 3.32 5.94 -2.38 -0.01 3.31 16 28 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.38 16.39 6.42 -92.71 -0.59 15.79 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -64.09 240.32 3.13 -60.96 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.48 Total: 22.15 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 2.98 Total: -7.98 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -2.00 Total: -88.38 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.05 Total: -29.63 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.73 Total: 42.89 kcal Total: -64.09 3.13 -60.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614396.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.927 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds