Wall clock time and date at job start Mon Mar 30 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.84176 * 305.70490 * 4 3 2 6 6 C 1.54847 * 110.94996 * 181.97377 * 4 3 2 7 7 O 1.44278 * 101.20127 * 218.60955 * 6 4 3 8 8 C 1.34600 * 107.66185 * 24.63766 * 7 6 4 9 9 C 1.50700 * 122.93192 * 162.80054 * 8 7 6 10 10 C 1.50707 * 109.46922 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99760 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99995 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00281 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99941 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46995 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47207 * 119.99600 * 14 12 10 17 17 H 1.48495 * 109.47211 * 239.99805 * 14 12 10 18 18 N 1.28697 * 114.13691 * 342.77448 * 8 7 6 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.09005 * 111.07659 * 336.59147 * 6 4 3 27 27 H 1.09000 * 111.07553 * 100.62533 * 6 4 3 28 28 H 1.08999 * 109.47112 * 300.02085 * 9 8 7 29 29 H 1.08994 * 109.47869 * 60.02438 * 9 8 7 30 30 H 0.96999 * 120.00022 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9581 0.8480 0.8263 6 6 4.1235 2.8879 0.0491 7 8 5.2561 2.7849 -0.8386 8 6 5.0214 1.7637 -1.6834 9 6 5.7754 1.5790 -2.9751 10 6 5.2705 0.3462 -3.6796 11 1 4.4827 -0.2447 -3.2361 12 6 5.8143 -0.0273 -4.8903 13 7 6.7732 0.6925 -5.4305 14 14 5.1889 -1.5558 -5.7632 15 1 4.1154 -2.1846 -4.9524 16 1 4.6485 -1.1795 -7.0943 17 1 6.3060 -2.5187 -5.9367 18 7 4.0971 0.9584 -1.2916 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.3917 3.6012 -0.3302 27 1 4.4392 3.1521 1.0584 28 1 5.6228 2.4499 -3.6125 29 1 6.8384 1.4662 -2.7624 30 1 7.1555 0.4299 -6.2825 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260658835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:00 Heat of formation + Delta-G solvation = -55.141206 kcal Electronic energy + Delta-G solvation = -12415.887193 eV Core-core repulsion = 10210.313600 eV Total energy + Delta-G solvation = -2205.573592 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.03883 -36.53089 -35.57461 -33.85103 -32.38732 -29.59153 -27.29043 -25.51105 -22.98604 -21.97480 -20.97246 -18.40764 -17.80541 -17.14263 -16.35268 -16.25987 -15.56701 -14.83477 -14.36647 -14.22116 -13.82933 -13.72996 -13.29995 -12.86983 -12.75793 -12.58060 -12.35764 -12.07554 -11.93176 -11.72843 -11.50921 -11.40217 -10.69156 -10.62519 -9.88653 -8.21373 -6.28299 1.34085 1.43136 1.43646 1.58510 2.36652 2.61006 3.14604 3.31132 3.70461 3.98569 4.05231 4.22264 4.30852 4.44865 4.59029 4.73193 4.79139 4.92173 5.04632 5.06341 5.16543 5.24126 5.28301 5.39250 5.48083 5.57244 5.81936 6.08791 6.84631 7.10141 7.39864 8.92034 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.031342 B = 0.010287 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.145558 B = 2721.268515 C = 3523.111432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.089 4.089 4 C 0.007 3.993 5 H 0.095 0.905 6 C 0.017 3.983 7 O -0.371 6.371 8 C 0.309 3.691 9 C 0.087 3.913 10 C -0.520 4.520 11 H 0.075 0.925 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.277 1.277 18 N -0.549 5.549 19 H 0.047 0.953 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 1.772 11.364 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.127 4.127 4 C -0.102 4.102 5 H 0.113 0.887 6 C -0.059 4.059 7 O -0.275 6.275 8 C 0.084 3.916 9 C 0.049 3.951 10 C -0.558 4.558 11 H 0.093 0.907 12 C -0.194 4.194 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.285 5.285 19 H 0.066 0.934 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.154 0.846 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.731 1.182 11.081 14.794 hybrid contribution 0.326 0.042 -0.275 0.429 sum -9.405 1.224 10.806 14.378 Atomic orbital electron populations 1.21731 0.94462 1.01995 1.02059 1.21410 0.96609 0.96237 1.01511 1.21451 0.90662 0.98083 1.02483 1.23916 0.98717 0.93710 0.93865 0.88681 1.24880 0.87078 0.98312 0.95608 1.86943 1.43690 1.51809 1.45102 1.26278 0.91218 0.82678 0.91458 1.17874 0.94328 0.98288 0.84597 1.21426 1.20418 1.09402 1.04589 0.90722 1.25865 0.95152 1.00412 0.97954 1.70075 1.27341 1.40738 1.19136 0.85328 0.78328 0.78863 0.78099 1.19263 1.20171 1.20235 1.74942 1.14460 1.27658 1.11463 0.93386 0.92396 0.91152 0.91669 0.94100 0.93149 0.88352 0.89229 0.84631 0.94733 0.94926 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.34 16 2 C -0.12 -3.19 5.87 30.59 0.18 -3.01 16 3 C -0.09 -2.33 4.89 30.59 0.15 -2.18 16 4 C 0.01 0.24 3.73 45.41 0.17 0.41 16 5 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 6 C 0.02 0.50 7.74 72.61 0.56 1.06 16 7 O -0.37 -15.09 11.17 -78.65 -0.88 -15.97 16 8 C 0.31 14.52 7.68 88.57 0.68 15.20 16 9 C 0.09 4.72 5.60 29.10 0.16 4.88 16 10 C -0.52 -30.18 8.95 25.60 0.23 -29.95 16 11 H 0.07 4.38 6.76 -2.91 -0.02 4.36 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 14 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 N -0.55 -24.41 9.63 -429.21 -4.13 -28.54 16 19 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.38 7.97 -2.39 -0.02 1.36 16 24 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 2.33 7.92 -2.38 -0.02 2.31 16 27 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.12 257.15 1.71 -63.41 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.10 Total: 4.59 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.31 Total: -15.26 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.85 Total: -84.08 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.88 Total: -15.97 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.12 1.71 -63.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260658835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.272 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds