Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.83610 * 51.27182 * 4 3 2 6 6 C 1.54853 * 110.94842 * 175.00294 * 4 3 2 7 7 O 1.44269 * 101.19740 * 141.39301 * 6 4 3 8 8 C 1.34600 * 107.66771 * 335.36343 * 7 6 4 9 9 C 1.50700 * 122.93429 * 197.19877 * 8 7 6 10 10 C 1.50711 * 109.46840 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99776 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99914 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99926 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00068 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47305 * 89.99819 * 14 12 10 16 16 H 1.48513 * 109.47052 * 210.00035 * 14 12 10 17 17 H 1.48504 * 109.47148 * 329.99479 * 14 12 10 18 18 N 1.28635 * 114.12456 * 17.18993 * 8 7 6 19 19 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 21 21 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 22 22 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 23 23 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 24 24 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 25 25 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 26 26 H 1.09000 * 111.07443 * 259.37251 * 6 4 3 27 27 H 1.08993 * 111.07305 * 23.41183 * 6 4 3 28 28 H 1.09002 * 109.47390 * 300.01479 * 9 8 7 29 29 H 1.08994 * 109.47485 * 60.02040 * 9 8 7 30 30 H 0.97007 * 120.00432 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9573 0.8053 -0.7956 6 6 4.1235 2.8833 -0.1266 7 8 5.2568 2.8269 0.7642 8 6 5.0229 1.8513 1.6617 9 6 5.7781 1.7346 2.9605 10 6 5.2747 0.5396 3.7286 11 1 4.4864 -0.0736 3.3175 12 6 5.8204 0.2292 4.9561 13 7 5.3808 -0.8132 5.6265 14 14 7.1833 1.2903 5.6675 15 1 6.5884 2.3779 6.4849 16 1 8.0661 0.4554 6.5214 17 1 7.9792 1.8810 4.5616 18 7 4.0981 1.0276 1.3137 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6765 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 4.4383 3.0942 -1.1486 27 1 3.3921 3.6154 0.2154 28 1 6.8411 1.6114 2.7530 29 1 5.6256 2.6373 3.5520 30 1 5.7650 -1.0319 6.4900 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260658837.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -51.649591 kcal Electronic energy + Delta-G solvation = -12418.580591 eV Core-core repulsion = 10213.158407 eV Total energy + Delta-G solvation = -2205.422185 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06497 -36.55070 -35.51355 -33.90260 -32.65804 -29.99420 -27.31411 -25.14482 -23.01806 -21.98335 -20.89777 -18.84487 -17.83025 -17.12850 -16.31348 -16.15867 -15.66028 -14.84942 -14.64170 -14.34325 -13.85442 -13.78233 -13.36195 -12.90930 -12.77264 -12.51517 -12.21972 -12.09061 -11.81096 -11.78394 -11.55615 -11.46424 -10.75181 -10.68157 -9.93361 -8.21680 -6.28223 1.31587 1.42571 1.44528 1.54951 2.40321 2.46273 3.11107 3.29191 3.68008 3.96772 4.03756 4.20067 4.28765 4.44419 4.57910 4.68112 4.74759 4.80065 4.90889 5.01452 5.05877 5.08853 5.25531 5.35198 5.44025 5.51226 5.56322 6.33955 6.85790 7.10633 7.33291 8.94438 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039002 B = 0.009521 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.732544 B = 2940.315877 C = 3559.958832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.089 4.089 4 C 0.005 3.995 5 H 0.095 0.905 6 C 0.020 3.980 7 O -0.365 6.365 8 C 0.309 3.691 9 C 0.053 3.947 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.947 3.053 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.240 1.240 18 N -0.551 5.551 19 H 0.056 0.944 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.138 0.862 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 8.161 -12.373 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.127 4.127 4 C -0.104 4.104 5 H 0.113 0.887 6 C -0.056 4.056 7 O -0.270 6.270 8 C 0.084 3.916 9 C 0.015 3.985 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.589 5.589 14 Si 0.769 3.231 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.163 1.163 18 N -0.287 5.287 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.526 7.470 -12.052 14.884 hybrid contribution 0.603 0.412 0.257 0.774 sum -3.923 7.882 -11.795 14.719 Atomic orbital electron populations 1.21728 0.94387 1.01994 1.02102 1.21419 0.96757 0.96424 1.01260 1.21450 0.90862 0.97866 1.02495 1.23950 0.98656 0.94695 0.93115 0.88746 1.24869 0.87057 0.97901 0.95767 1.86919 1.43544 1.54693 1.41836 1.25902 0.91306 0.83373 0.91061 1.18404 0.95785 0.98345 0.85975 1.21156 1.20900 1.10859 1.03054 0.92805 1.25912 0.99542 0.96527 0.96925 1.70055 1.44724 1.29247 1.14919 0.85724 0.79175 0.78831 0.79356 1.18876 1.20990 1.16327 1.75022 1.14399 1.27087 1.12217 0.92485 0.93527 0.90838 0.91519 0.94729 0.88077 0.93281 0.84401 0.89023 0.92242 0.92182 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.57 16 2 C -0.12 -3.43 5.89 30.59 0.18 -3.25 16 3 C -0.09 -2.41 4.88 30.59 0.15 -2.26 16 4 C 0.01 0.17 3.71 45.41 0.17 0.34 16 5 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 6 C 0.02 0.55 7.74 72.61 0.56 1.11 16 7 O -0.37 -13.63 11.17 -78.66 -0.88 -14.51 16 8 C 0.31 13.78 7.68 88.58 0.68 14.46 16 9 C 0.05 2.54 4.67 29.11 0.14 2.67 16 10 C -0.52 -30.71 9.51 25.60 0.24 -30.47 16 11 H 0.05 3.60 7.01 -2.91 -0.02 3.58 16 12 C 0.01 0.44 5.47 84.65 0.46 0.91 16 13 N -0.95 -60.16 13.96 21.44 0.30 -59.87 16 14 Si 0.95 43.08 27.47 68.60 1.88 44.96 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 18 N -0.55 -24.90 9.76 -429.27 -4.19 -29.09 16 19 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 24 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 28 H 0.06 2.73 7.20 -2.39 -0.02 2.71 16 29 H 0.06 2.70 7.57 -2.39 -0.02 2.68 16 30 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -69.61 253.77 1.46 -68.16 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.04 Total: 9.41 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.30 Total: -19.06 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.89 Total: -88.96 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.88 Total: -14.51 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -69.61 1.46 -68.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260658837.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.506 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds