Wall clock time and date at job start Mon Mar 30 2020 02:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 H 1.09000 * 109.46949 * 179.90553 * 3 2 1 5 5 C 1.50698 * 109.47523 * 59.90134 * 3 2 1 6 6 H 1.08001 * 119.99845 * 239.99996 * 5 3 2 7 7 C 1.37872 * 119.99824 * 59.72210 * 5 3 2 8 8 N 1.31522 * 120.00044 * 0.27964 * 7 5 3 9 9 Si 1.86794 * 120.00147 * 180.27410 * 7 5 3 10 10 H 1.48508 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47259 * 120.00276 * 9 7 5 12 12 H 1.48498 * 109.47753 * 240.00409 * 9 7 5 13 13 C 1.53000 * 109.47051 * 299.89784 * 3 2 1 14 14 H 1.08998 * 110.43376 * 60.08292 * 13 3 2 15 15 C 1.54627 * 110.48918 * 182.62444 * 13 3 2 16 16 C 1.54477 * 101.76824 * 93.88087 * 15 13 3 17 17 N 1.46769 * 105.47087 * 25.41996 * 16 15 13 18 18 C 1.34424 * 111.29692 * 342.98096 * 17 16 15 19 19 O 1.21286 * 124.93753 * 180.44586 * 18 17 16 20 20 H 1.09004 * 109.47428 * 305.45920 * 1 2 3 21 21 H 1.09004 * 109.47208 * 65.45537 * 1 2 3 22 22 H 1.09003 * 109.47085 * 185.45130 * 1 2 3 23 23 H 1.08990 * 109.47328 * 239.99917 * 2 1 3 24 24 H 1.09005 * 109.47005 * 119.99381 * 2 1 3 25 25 H 0.97006 * 119.99874 * 180.02562 * 8 7 5 26 26 H 1.09002 * 110.97232 * 212.00352 * 15 13 3 27 27 H 1.09006 * 110.96453 * 335.76160 * 15 13 3 28 28 H 1.08998 * 110.25024 * 144.41658 * 16 15 13 29 29 H 1.09000 * 110.24877 * 266.42486 * 16 15 13 30 30 H 0.96999 * 124.34864 * 162.98475 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0017 5 6 1.5356 2.1537 1.2292 6 1 0.9148 3.0318 1.1285 7 6 1.8620 1.6801 2.4822 8 7 2.6180 0.6109 2.6047 9 14 1.2306 2.5571 4.0058 10 1 0.4068 3.7241 3.5997 11 1 0.4016 1.6217 4.8076 12 1 2.3808 3.0227 4.8216 13 6 1.5320 2.1630 -1.2505 14 1 0.4422 2.1734 -1.2675 15 6 2.0878 3.6048 -1.3079 16 6 3.3505 3.4213 -2.1787 17 7 3.0902 2.2333 -3.0002 18 6 2.0774 1.5053 -2.4989 19 8 1.6619 0.4712 -2.9774 20 1 -0.3634 0.5962 0.8371 21 1 -0.3634 0.4269 -0.9348 22 1 -0.3633 -1.0230 0.0976 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.8473 0.2775 3.4864 26 1 1.3774 4.2780 -1.7877 27 1 2.3494 3.9618 -0.3117 28 1 3.5004 4.2939 -2.8144 29 1 4.2240 3.2591 -1.5472 30 1 3.5854 2.0030 -3.8019 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:02 Heat of formation + Delta-G solvation = -53.896977 kcal Electronic energy + Delta-G solvation = -13172.055138 eV Core-core repulsion = 10966.535500 eV Total energy + Delta-G solvation = -2205.519639 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.79709 -35.83868 -34.86474 -31.58423 -30.04601 -27.28491 -25.82920 -23.47953 -21.07429 -20.45976 -18.52846 -16.80895 -16.10231 -15.24412 -14.50001 -14.30283 -13.41709 -13.23232 -12.71062 -12.67606 -12.16716 -11.95730 -11.68610 -10.95910 -10.89799 -10.56524 -10.53676 -10.28372 -9.81655 -9.42358 -9.30989 -9.01405 -8.57271 -8.51934 -8.28528 -5.98111 -4.04487 3.28680 3.32371 3.37968 3.40760 3.92688 4.42778 5.13619 5.29037 5.31930 5.44881 5.77401 5.96933 6.21221 6.49188 6.62908 6.64135 6.72863 6.83083 6.95346 7.27894 7.34868 7.51745 7.57872 7.63589 7.76981 7.89656 8.18557 8.42468 8.90380 8.98215 9.58871 11.07215 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.013009 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.303085 B = 2151.762162 C = 2501.780712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.069 3.931 4 H 0.026 0.974 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.111 4.111 14 H 0.093 0.907 15 C -0.128 4.128 16 C 0.105 3.895 17 N -0.743 5.743 18 C 0.523 3.477 19 O -0.543 6.543 20 H 0.059 0.941 21 H 0.032 0.968 22 H 0.021 0.979 23 H 0.024 0.976 24 H 0.088 0.912 25 H 0.259 0.741 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 5.854 -5.930 8.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C 0.051 3.949 4 H 0.044 0.956 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.133 4.133 14 H 0.111 0.889 15 C -0.166 4.166 16 C -0.019 4.019 17 N -0.398 5.398 18 C 0.311 3.689 19 O -0.420 6.420 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.040 0.960 23 H 0.043 0.957 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.592 5.230 -5.925 7.925 hybrid contribution 0.007 0.357 0.525 0.635 sum 0.599 5.587 -5.401 7.793 Atomic orbital electron populations 1.21604 0.98096 0.98519 1.00341 1.21537 0.94533 0.99023 1.00700 1.18565 0.95836 0.91904 0.88630 0.95607 1.21069 1.31524 1.11680 0.90022 0.92324 1.24929 0.95126 0.94944 0.98838 1.69909 1.36832 1.22672 1.23109 0.86607 0.78642 0.79731 0.83433 1.19755 1.21134 1.21183 1.22207 1.01611 0.94676 0.94779 0.88874 1.22678 0.95430 0.97067 1.01411 1.22026 0.99503 0.86927 0.93477 1.46298 1.37015 1.27174 1.29341 1.21435 0.79052 0.83256 0.85190 1.90650 1.62921 1.23245 1.65165 0.92202 0.94921 0.95988 0.95705 0.89360 0.93089 0.91832 0.87739 0.91573 0.91323 0.76505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.27 37.16 0.34 -2.62 16 2 C -0.12 -3.02 5.21 -26.73 -0.14 -3.15 16 3 C 0.07 1.68 1.67 -91.77 -0.15 1.52 16 4 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.50 -12.81 6.16 -34.44 -0.21 -13.02 16 6 H 0.06 1.45 7.41 -52.49 -0.39 1.06 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.11 -2.27 2.07 -90.63 -0.19 -2.46 16 14 H 0.09 1.95 6.63 -51.93 -0.34 1.60 16 15 C -0.13 -2.10 6.44 -25.10 -0.16 -2.27 16 16 C 0.11 1.49 7.78 -3.12 -0.02 1.47 16 17 N -0.74 -11.98 6.24 -59.20 -0.37 -12.35 16 18 C 0.52 10.70 7.23 -10.86 -0.08 10.62 16 19 O -0.54 -12.86 16.67 5.55 0.09 -12.76 16 20 H 0.06 1.42 7.03 -51.93 -0.36 1.05 16 21 H 0.03 0.71 6.75 -51.93 -0.35 0.36 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.63 6.46 -51.93 -0.34 0.29 16 24 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.82 6.87 -51.93 -0.36 1.47 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.40 5.42 8.96 -40.82 -0.37 5.06 16 LS Contribution 241.38 15.07 3.64 3.64 Total: -1.00 -29.60 241.38 -5.81 -35.41 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.07 Total: 3.04 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.71 Total: -8.34 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.26 Total: -36.45 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.60 -5.81 -35.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.484 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds