Wall clock time and date at job start Mon Mar 30 2020 02:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46791 * 2 1 4 4 H 1.09000 * 109.46949 * 179.90553 * 3 2 1 5 5 C 1.50698 * 109.47523 * 59.90134 * 3 2 1 6 6 H 1.08001 * 119.99845 * 239.99996 * 5 3 2 7 7 C 1.37872 * 119.99824 * 59.72210 * 5 3 2 8 8 N 1.31522 * 120.00044 * 0.27964 * 7 5 3 9 9 Si 1.86794 * 120.00147 * 180.27410 * 7 5 3 10 10 H 1.48508 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47259 * 120.00276 * 9 7 5 12 12 H 1.48498 * 109.47753 * 240.00409 * 9 7 5 13 13 C 1.53000 * 109.47051 * 299.89784 * 3 2 1 14 14 H 1.08998 * 110.43376 * 60.08292 * 13 3 2 15 15 C 1.54627 * 110.48918 * 182.62444 * 13 3 2 16 16 C 1.54477 * 101.76824 * 93.88087 * 15 13 3 17 17 N 1.46769 * 105.47087 * 25.41996 * 16 15 13 18 18 C 1.34424 * 111.29692 * 342.98096 * 17 16 15 19 19 O 1.21286 * 124.93753 * 180.44586 * 18 17 16 20 20 H 1.09004 * 109.47428 * 305.45920 * 1 2 3 21 21 H 1.09004 * 109.47208 * 65.45537 * 1 2 3 22 22 H 1.09003 * 109.47085 * 185.45130 * 1 2 3 23 23 H 1.08990 * 109.47328 * 239.99917 * 2 1 3 24 24 H 1.09005 * 109.47005 * 119.99381 * 2 1 3 25 25 H 0.97006 * 119.99874 * 180.02562 * 8 7 5 26 26 H 1.09002 * 110.97232 * 212.00352 * 15 13 3 27 27 H 1.09006 * 110.96453 * 335.76160 * 15 13 3 28 28 H 1.08998 * 110.25024 * 144.41658 * 16 15 13 29 29 H 1.09000 * 110.24877 * 266.42486 * 16 15 13 30 30 H 0.96999 * 124.34864 * 162.98475 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 0.0017 5 6 1.5356 2.1537 1.2292 6 1 0.9148 3.0318 1.1285 7 6 1.8620 1.6801 2.4822 8 7 2.6180 0.6109 2.6047 9 14 1.2306 2.5571 4.0058 10 1 0.4068 3.7241 3.5997 11 1 0.4016 1.6217 4.8076 12 1 2.3808 3.0227 4.8216 13 6 1.5320 2.1630 -1.2505 14 1 0.4422 2.1734 -1.2675 15 6 2.0878 3.6048 -1.3079 16 6 3.3505 3.4213 -2.1787 17 7 3.0902 2.2333 -3.0002 18 6 2.0774 1.5053 -2.4989 19 8 1.6619 0.4712 -2.9774 20 1 -0.3634 0.5962 0.8371 21 1 -0.3634 0.4269 -0.9348 22 1 -0.3633 -1.0230 0.0976 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.8473 0.2775 3.4864 26 1 1.3774 4.2780 -1.7877 27 1 2.3494 3.9618 -0.3117 28 1 3.5004 4.2939 -2.8144 29 1 4.2240 3.2591 -1.5472 30 1 3.5854 2.0030 -3.8019 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676656.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:02 Heat of formation + Delta-G solvation = -74.250961 kcal Electronic energy + Delta-G solvation = -13172.937753 eV Core-core repulsion = 10966.535500 eV Total energy + Delta-G solvation = -2206.402253 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.33787 -37.51653 -36.60838 -33.53493 -31.65530 -28.88720 -27.62544 -25.35656 -22.48213 -22.22138 -20.25004 -18.29171 -18.02678 -16.95643 -16.19130 -15.92227 -15.15080 -14.87567 -14.42937 -14.26428 -13.96492 -13.70129 -13.17770 -12.81137 -12.60902 -12.37867 -12.11720 -12.06261 -11.68825 -11.30832 -11.16116 -10.84070 -10.39011 -10.30788 -9.91402 -8.00169 -6.11966 1.46178 1.50003 1.59140 1.72997 2.49150 2.62238 3.28777 3.73327 3.89069 4.20955 4.42790 4.64161 4.68290 4.75803 4.84256 4.96135 5.04302 5.25407 5.30692 5.46400 5.59715 5.64334 5.73876 5.85848 6.05227 6.14609 6.15530 6.41296 6.96800 7.42565 7.54685 9.05163 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.013009 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.303085 B = 2151.762162 C = 2501.780712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.074 3.926 4 H -0.004 1.004 5 C -0.502 4.502 6 H 0.067 0.933 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.259 1.259 11 H -0.291 1.291 12 H -0.285 1.285 13 C -0.114 4.114 14 H 0.087 0.913 15 C -0.123 4.123 16 C 0.106 3.894 17 N -0.725 5.725 18 C 0.515 3.485 19 O -0.583 6.583 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.013 0.987 24 H 0.058 0.942 25 H 0.257 0.743 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 7.901 -6.499 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C 0.055 3.945 4 H 0.014 0.986 5 C -0.540 4.540 6 H 0.085 0.915 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.183 1.183 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.136 4.136 14 H 0.105 0.895 15 C -0.160 4.160 16 C -0.018 4.018 17 N -0.380 5.380 18 C 0.302 3.698 19 O -0.464 6.464 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.360 7.325 -6.514 9.809 hybrid contribution 0.129 -0.285 0.672 0.741 sum 0.488 7.040 -5.842 9.161 Atomic orbital electron populations 1.21479 0.96447 0.99168 1.00388 1.21456 0.95966 0.99561 0.98588 1.18403 0.93972 0.91664 0.90497 0.98566 1.21333 1.30766 1.11566 0.90376 0.91452 1.25672 0.95472 0.95575 1.01757 1.70059 1.38361 1.24256 1.23475 0.85638 0.78010 0.78866 0.79932 1.18294 1.21726 1.21142 1.22078 1.01369 0.97049 0.93089 0.89453 1.22671 0.96898 0.94632 1.01844 1.22223 0.98189 0.87574 0.93774 1.46207 1.35404 1.26913 1.29502 1.21464 0.80000 0.83009 0.85286 1.90622 1.64523 1.24963 1.66283 0.93003 0.93969 0.94923 0.96832 0.92307 0.93378 0.88848 0.88796 0.86763 0.91501 0.74780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 9.27 71.98 0.67 -4.76 16 2 C -0.12 -6.04 5.21 30.60 0.16 -5.88 16 3 C 0.07 3.57 1.67 -11.54 -0.02 3.55 16 4 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 5 C -0.50 -25.26 6.16 25.60 0.16 -25.11 16 6 H 0.07 3.22 7.41 -2.91 -0.02 3.20 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.92 -52.34 11.31 21.45 0.24 -52.10 16 9 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 13 C -0.11 -4.54 2.07 -10.80 -0.02 -4.56 16 14 H 0.09 3.55 6.63 -2.39 -0.02 3.53 16 15 C -0.12 -3.68 6.44 31.65 0.20 -3.48 16 16 C 0.11 2.63 7.78 86.83 0.68 3.31 16 17 N -0.73 -21.63 6.24 -459.80 -2.87 -24.50 16 18 C 0.51 20.55 7.23 87.90 0.64 21.18 16 19 O -0.58 -27.59 16.67 -3.05 -0.05 -27.64 16 20 H 0.05 2.44 7.03 -2.38 -0.02 2.42 16 21 H 0.04 1.83 6.75 -2.39 -0.02 1.82 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 23 H 0.01 0.69 6.46 -2.39 -0.02 0.67 16 24 H 0.06 3.36 6.06 -2.38 -0.01 3.34 16 25 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 3.06 6.87 -2.38 -0.02 3.04 16 28 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.41 10.15 8.96 -92.71 -0.83 9.32 16 Total: -1.00 -64.12 241.38 2.56 -61.56 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.31 Total: 13.54 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 2.91 Total: -14.59 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.63 Total: -76.60 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.12 2.56 -61.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676656.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.695 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds