Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 H 1.09008 * 109.47167 * 305.53050 * 3 2 1 5 5 C 1.50697 * 109.47604 * 65.53384 * 3 2 1 6 6 H 1.07999 * 119.99982 * 65.13664 * 5 3 2 7 7 C 1.37877 * 120.00099 * 245.14314 * 5 3 2 8 8 N 1.31512 * 120.00068 * 5.94015 * 7 5 3 9 9 Si 1.86800 * 119.99964 * 185.93685 * 7 5 3 10 10 H 1.48503 * 109.46803 * 60.00334 * 9 7 5 11 11 H 1.48499 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47250 * 300.00374 * 9 7 5 13 13 C 1.53002 * 109.47385 * 185.53720 * 3 2 1 14 14 H 1.09000 * 110.43196 * 301.08507 * 13 3 2 15 15 C 1.54624 * 110.48717 * 63.76613 * 13 3 2 16 16 C 1.54482 * 101.76320 * 143.47937 * 15 13 3 17 17 N 1.46756 * 105.47564 * 334.58483 * 16 15 13 18 18 C 1.34424 * 111.29882 * 17.01483 * 17 16 15 19 19 O 1.21279 * 124.94071 * 179.62532 * 18 17 16 20 20 H 1.09008 * 109.47234 * 294.74873 * 1 2 3 21 21 H 1.08998 * 109.46788 * 54.74536 * 1 2 3 22 22 H 1.08996 * 109.47152 * 174.74286 * 1 2 3 23 23 H 1.08998 * 109.47234 * 239.99332 * 2 1 3 24 24 H 1.09006 * 109.47357 * 119.99396 * 2 1 3 25 25 H 0.96997 * 119.99940 * 179.97438 * 8 7 5 26 26 H 1.08999 * 110.97105 * 261.59911 * 15 13 3 27 27 H 1.09002 * 110.97149 * 25.35873 * 15 13 3 28 28 H 1.09004 * 110.24397 * 215.58558 * 16 15 13 29 29 H 1.09001 * 110.24598 * 93.58488 * 16 15 13 30 30 H 0.96997 * 124.35355 * 197.04283 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8364 5 6 1.6527 2.1123 1.2932 6 1 2.0674 1.7634 2.2274 7 6 0.7689 3.1705 1.2837 8 7 0.1743 3.5207 0.1642 9 14 0.4161 4.1069 2.8612 10 1 1.6767 4.6969 3.3790 11 1 -0.5605 5.1910 2.5854 12 1 -0.1477 3.1775 3.8729 13 6 3.5637 1.4447 -0.1392 14 1 4.0214 0.8901 0.6799 15 6 3.9835 0.8474 -1.5022 16 6 5.2028 1.7228 -1.8676 17 7 5.0012 2.9911 -1.1573 18 6 4.0897 2.8625 -0.1776 19 8 3.7397 3.7538 0.5668 20 1 -0.3634 0.4303 0.9333 21 1 -0.3633 0.5932 -0.8392 22 1 -0.3633 -1.0233 -0.0942 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 -0.4478 4.2649 0.1577 26 1 4.2716 -0.1986 -1.3976 27 1 3.1880 0.9595 -2.2389 28 1 5.2352 1.8941 -2.9436 29 1 6.1237 1.2453 -1.5329 30 1 5.4655 3.8162 -1.3679 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = -50.013466 kcal Electronic energy + Delta-G solvation = -13151.032089 eV Core-core repulsion = 10945.680852 eV Total energy + Delta-G solvation = -2205.351237 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.43462 -35.45326 -34.74345 -31.51987 -30.14138 -27.67242 -25.34644 -23.11394 -21.37774 -19.71257 -18.65742 -16.59749 -16.26045 -15.36044 -14.38531 -13.88007 -13.29389 -12.89055 -12.80963 -12.57772 -12.19943 -11.78431 -11.46390 -11.12982 -10.74487 -10.65471 -10.36119 -10.17317 -9.82550 -9.69873 -8.96112 -8.75737 -8.57315 -8.37541 -8.09604 -5.79816 -3.75565 3.49137 3.52815 3.61878 3.74429 4.11973 4.67693 5.15613 5.32975 5.37120 5.63216 5.75411 6.01594 6.16405 6.29185 6.37840 6.45956 6.60824 6.71341 6.91856 7.13665 7.24319 7.46510 7.59242 7.72563 7.84140 7.92975 8.11988 8.58227 9.25758 9.34433 9.86350 11.30764 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033263 B = 0.015895 C = 0.011906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.565072 B = 1761.085022 C = 2351.261851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.046 3.954 4 H 0.069 0.931 5 C -0.489 4.489 6 H 0.046 0.954 7 C 0.082 3.918 8 N -0.896 5.896 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.111 4.111 14 H 0.084 0.916 15 C -0.134 4.134 16 C 0.107 3.893 17 N -0.756 5.756 18 C 0.524 3.476 19 O -0.494 6.494 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.019 0.981 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.257 0.743 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -5.592 -4.824 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.027 3.973 4 H 0.087 0.913 5 C -0.526 4.526 6 H 0.065 0.935 7 C -0.119 4.119 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.133 4.133 14 H 0.102 0.898 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.415 5.415 18 C 0.311 3.689 19 O -0.365 6.365 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.832 -5.076 -4.426 9.593 hybrid contribution 0.147 0.948 0.649 1.159 sum 6.979 -4.127 -3.777 8.944 Atomic orbital electron populations 1.21484 0.96522 0.97426 1.02904 1.21585 0.95892 0.99009 0.97799 1.18918 0.85991 0.92366 1.00026 0.91268 1.20705 1.25154 1.14723 0.92056 0.93538 1.24715 0.95403 0.96280 0.95513 1.69861 1.29094 1.28515 1.26057 0.86795 0.77753 0.79789 0.84405 1.20120 1.21774 1.20766 1.22206 1.02815 0.92684 0.95636 0.89761 1.22736 0.96853 0.98688 0.98893 1.21875 0.98418 0.85285 0.96217 1.46420 1.45367 1.12158 1.37565 1.20947 0.77603 0.91351 0.79032 1.90726 1.57906 1.45623 1.42252 0.92130 0.93300 0.96205 0.95519 0.94289 0.93369 0.90591 0.90377 0.91748 0.92496 0.76755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.65 37.15 0.36 -2.34 16 2 C -0.10 -2.21 5.29 -26.73 -0.14 -2.35 16 3 C 0.05 1.12 1.55 -91.77 -0.14 0.98 16 4 H 0.07 1.90 6.95 -51.92 -0.36 1.54 16 5 C -0.49 -13.64 5.70 -34.44 -0.20 -13.84 16 6 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 7 C 0.08 2.39 5.27 -17.82 -0.09 2.29 16 8 N -0.90 -26.78 12.64 55.43 0.70 -26.08 16 9 Si 0.88 23.25 29.54 -169.99 -5.02 18.23 16 10 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 C -0.11 -2.30 2.49 -90.63 -0.23 -2.53 16 14 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 15 C -0.13 -2.08 5.61 -25.10 -0.14 -2.22 16 16 C 0.11 1.45 7.78 -3.12 -0.02 1.43 16 17 N -0.76 -13.01 6.24 -59.20 -0.37 -13.38 16 18 C 0.52 11.85 7.83 -10.86 -0.09 11.76 16 19 O -0.49 -13.64 16.19 5.56 0.09 -13.55 16 20 H 0.06 1.43 7.57 -51.92 -0.39 1.04 16 21 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.03 0.49 7.22 -51.93 -0.37 0.11 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.40 5.99 8.96 -40.82 -0.37 5.62 16 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -32.37 248.83 -5.95 -38.32 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.41 Total: -0.46 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.69 Total: -6.82 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.33 Total: -39.46 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.37 -5.95 -38.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.696 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds