Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 H 1.09008 * 109.47167 * 305.53050 * 3 2 1 5 5 C 1.50697 * 109.47604 * 65.53384 * 3 2 1 6 6 H 1.07999 * 119.99982 * 65.13664 * 5 3 2 7 7 C 1.37877 * 120.00099 * 245.14314 * 5 3 2 8 8 N 1.31512 * 120.00068 * 5.94015 * 7 5 3 9 9 Si 1.86800 * 119.99964 * 185.93685 * 7 5 3 10 10 H 1.48503 * 109.46803 * 60.00334 * 9 7 5 11 11 H 1.48499 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47250 * 300.00374 * 9 7 5 13 13 C 1.53002 * 109.47385 * 185.53720 * 3 2 1 14 14 H 1.09000 * 110.43196 * 301.08507 * 13 3 2 15 15 C 1.54624 * 110.48717 * 63.76613 * 13 3 2 16 16 C 1.54482 * 101.76320 * 143.47937 * 15 13 3 17 17 N 1.46756 * 105.47564 * 334.58483 * 16 15 13 18 18 C 1.34424 * 111.29882 * 17.01483 * 17 16 15 19 19 O 1.21279 * 124.94071 * 179.62532 * 18 17 16 20 20 H 1.09008 * 109.47234 * 294.74873 * 1 2 3 21 21 H 1.08998 * 109.46788 * 54.74536 * 1 2 3 22 22 H 1.08996 * 109.47152 * 174.74286 * 1 2 3 23 23 H 1.08998 * 109.47234 * 239.99332 * 2 1 3 24 24 H 1.09006 * 109.47357 * 119.99396 * 2 1 3 25 25 H 0.96997 * 119.99940 * 179.97438 * 8 7 5 26 26 H 1.08999 * 110.97105 * 261.59911 * 15 13 3 27 27 H 1.09002 * 110.97149 * 25.35873 * 15 13 3 28 28 H 1.09004 * 110.24397 * 215.58558 * 16 15 13 29 29 H 1.09001 * 110.24598 * 93.58488 * 16 15 13 30 30 H 0.96997 * 124.35355 * 197.04283 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8364 5 6 1.6527 2.1123 1.2932 6 1 2.0674 1.7634 2.2274 7 6 0.7689 3.1705 1.2837 8 7 0.1743 3.5207 0.1642 9 14 0.4161 4.1069 2.8612 10 1 1.6767 4.6969 3.3790 11 1 -0.5605 5.1910 2.5854 12 1 -0.1477 3.1775 3.8729 13 6 3.5637 1.4447 -0.1392 14 1 4.0214 0.8901 0.6799 15 6 3.9835 0.8474 -1.5022 16 6 5.2028 1.7228 -1.8676 17 7 5.0012 2.9911 -1.1573 18 6 4.0897 2.8625 -0.1776 19 8 3.7397 3.7538 0.5668 20 1 -0.3634 0.4303 0.9333 21 1 -0.3633 0.5932 -0.8392 22 1 -0.3633 -1.0233 -0.0942 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 -0.4478 4.2649 0.1577 26 1 4.2716 -0.1986 -1.3976 27 1 3.1880 0.9595 -2.2389 28 1 5.2352 1.8941 -2.9436 29 1 6.1237 1.2453 -1.5329 30 1 5.4655 3.8162 -1.3679 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676658.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = -73.622759 kcal Electronic energy + Delta-G solvation = -13152.055865 eV Core-core repulsion = 10945.680852 eV Total energy + Delta-G solvation = -2206.375013 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01622 -37.22027 -36.48025 -33.59161 -31.68156 -29.25034 -27.19189 -24.97181 -22.75564 -21.38120 -20.36436 -18.53527 -17.92977 -16.88918 -16.46024 -15.49926 -15.09342 -14.52046 -14.38000 -14.21275 -13.95060 -13.51354 -12.95752 -12.89529 -12.76162 -12.53108 -12.23956 -11.87486 -11.56125 -11.41009 -10.89309 -10.74507 -10.52376 -10.11309 -9.78144 -8.00148 -5.96829 1.34079 1.39891 1.46331 2.02466 2.51817 2.76283 3.36427 3.90634 3.95333 4.21812 4.54507 4.62369 4.66702 4.86568 4.87158 4.91358 5.20083 5.22352 5.31447 5.43410 5.50112 5.69897 5.79930 5.90719 6.00426 6.28028 6.31495 6.51204 7.10716 7.65158 7.71106 9.09445 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.033263 B = 0.015895 C = 0.011906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.565072 B = 1761.085022 C = 2351.261851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C 0.044 3.956 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.033 0.967 7 C 0.036 3.964 8 N -0.924 5.924 9 Si 0.921 3.079 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.267 1.267 13 C -0.116 4.116 14 H 0.090 0.910 15 C -0.124 4.124 16 C 0.106 3.894 17 N -0.743 5.743 18 C 0.508 3.492 19 O -0.562 6.562 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.251 0.749 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -7.644 -5.986 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.137 4.137 3 C 0.025 3.975 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.051 0.949 7 C -0.162 4.162 8 N -0.565 5.565 9 Si 0.750 3.250 10 H -0.218 1.218 11 H -0.214 1.214 12 H -0.192 1.192 13 C -0.138 4.138 14 H 0.108 0.892 15 C -0.161 4.161 16 C -0.017 4.017 17 N -0.400 5.400 18 C 0.295 3.705 19 O -0.439 6.439 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 8.409 -7.166 -5.624 12.397 hybrid contribution -0.243 1.536 0.975 1.835 sum 8.166 -5.630 -4.649 10.954 Atomic orbital electron populations 1.21417 0.97099 0.98994 1.00321 1.21490 0.95343 0.96986 0.99852 1.18841 0.88588 0.93598 0.96501 0.94960 1.21023 1.23734 1.14356 0.93251 0.94913 1.25231 0.96169 0.97463 0.97339 1.69964 1.30241 1.29094 1.27185 0.86184 0.76884 0.79272 0.82676 1.21753 1.21423 1.19175 1.22107 1.00015 0.92396 0.99287 0.89215 1.22746 0.97469 1.00944 0.94979 1.22226 0.98757 0.82958 0.97797 1.46376 1.43406 1.14194 1.36000 1.21453 0.78122 0.91606 0.79306 1.90682 1.60534 1.47553 1.45134 0.95289 0.95249 0.92522 0.91817 0.93559 0.93968 0.86803 0.91025 0.88488 0.89096 0.75604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.65 71.98 0.69 -4.36 16 2 C -0.10 -3.95 5.29 30.59 0.16 -3.78 16 3 C 0.04 2.12 1.55 -11.54 -0.02 2.10 16 4 H 0.03 1.79 6.95 -2.38 -0.02 1.78 16 5 C -0.49 -27.63 5.70 25.60 0.15 -27.49 16 6 H 0.03 1.90 7.82 -2.91 -0.02 1.88 16 7 C 0.04 2.12 5.27 84.66 0.45 2.57 16 8 N -0.92 -57.05 12.64 21.45 0.27 -56.78 16 9 Si 0.92 48.87 29.54 68.60 2.03 50.90 16 10 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16 11 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 12 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 13 C -0.12 -4.60 2.49 -10.80 -0.03 -4.63 16 14 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 15 C -0.12 -3.32 5.61 31.65 0.18 -3.14 16 16 C 0.11 2.35 7.78 86.83 0.68 3.03 16 17 N -0.74 -23.83 6.24 -459.81 -2.87 -26.70 16 18 C 0.51 22.75 7.83 87.90 0.69 23.44 16 19 O -0.56 -31.96 16.19 -3.03 -0.05 -32.01 16 20 H 0.03 1.35 7.57 -2.38 -0.02 1.33 16 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.06 2.08 7.22 -2.39 -0.02 2.06 16 24 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.05 7.90 -2.39 -0.02 2.03 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.41 11.48 8.96 -92.71 -0.83 10.65 16 Total: -1.00 -73.86 248.83 2.61 -71.24 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.29 Total: 5.62 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 2.94 Total: -12.28 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.60 Total: -83.48 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.05 Total: -32.01 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -73.86 2.61 -71.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676658.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.379 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds