Wall clock time and date at job start Mon Mar 30 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 H 1.08997 * 109.47894 * 177.50160 * 3 2 1 5 5 C 1.50703 * 109.46803 * 57.50268 * 3 2 1 6 6 H 1.07997 * 120.00286 * 239.99883 * 5 3 2 7 7 C 1.37875 * 119.99758 * 60.00209 * 5 3 2 8 8 N 1.31513 * 120.00412 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47065 * 89.99895 * 9 7 5 11 11 H 1.48493 * 109.47298 * 210.00018 * 9 7 5 12 12 H 1.48502 * 109.46965 * 330.00227 * 9 7 5 13 13 C 1.52996 * 109.47262 * 297.50508 * 3 2 1 14 14 H 1.08998 * 110.43404 * 66.95327 * 13 3 2 15 15 C 1.54623 * 110.48807 * 304.41029 * 13 3 2 16 16 C 1.54478 * 101.76916 * 216.52048 * 15 13 3 17 17 N 1.46768 * 105.46722 * 25.41687 * 16 15 13 18 18 C 1.34649 * 111.33785 * 342.86784 * 17 16 15 19 19 O 1.21282 * 125.06813 * 180.52253 * 18 17 16 20 20 H 1.09003 * 109.47282 * 58.44132 * 1 2 3 21 21 H 1.09002 * 109.47193 * 178.43841 * 1 2 3 22 22 H 1.08998 * 109.47216 * 298.44021 * 1 2 3 23 23 H 1.08999 * 109.47299 * 120.00451 * 2 1 3 24 24 H 1.09004 * 109.47434 * 240.00367 * 2 1 3 25 25 H 0.96999 * 120.00606 * 180.02562 * 8 7 5 26 26 H 1.09002 * 110.97145 * 334.64657 * 15 13 3 27 27 H 1.09002 * 110.96794 * 98.36617 * 15 13 3 28 28 H 1.08996 * 110.24377 * 144.41097 * 16 15 13 29 29 H 1.08995 * 110.24899 * 266.33146 * 16 15 13 30 30 H 0.97006 * 124.34431 * 162.98397 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4429 0.0448 5 6 1.4877 2.1705 1.1984 6 1 0.8717 3.0469 1.0612 7 6 1.7690 1.7177 2.4699 8 7 2.5196 0.6508 2.6371 9 14 1.0851 2.6205 3.9555 10 1 -0.2389 2.0516 4.3141 11 1 2.0170 2.4657 5.1011 12 1 0.9333 4.0619 3.6320 13 6 1.5820 2.1454 -1.2794 14 1 0.4984 2.2632 -1.2818 15 6 2.0431 1.3551 -2.5259 16 6 2.3797 2.4938 -3.5141 17 7 2.7050 3.6548 -2.6773 18 6 2.2611 3.4902 -1.4169 19 8 2.3875 4.2993 -0.5223 20 1 -0.3634 0.5379 -0.8757 21 1 -0.3634 -1.0273 -0.0280 22 1 -0.3633 0.4894 0.9036 23 1 1.8933 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.7171 0.3320 3.5316 26 1 2.9271 0.7573 -2.3037 27 1 1.2380 0.7291 -2.9107 28 1 3.2375 2.2191 -4.1280 29 1 1.5187 2.7118 -4.1458 30 1 3.1777 4.4412 -2.9923 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:06 Heat of formation + Delta-G solvation = -49.564483 kcal Electronic energy + Delta-G solvation = -13133.425929 eV Core-core repulsion = 10928.094162 eV Total energy + Delta-G solvation = -2205.331767 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65505 -35.77151 -34.93985 -31.57579 -29.71306 -27.73981 -25.54891 -23.34385 -21.60126 -20.06725 -18.28693 -16.63299 -16.16703 -15.54660 -14.54184 -13.99101 -13.38803 -13.26338 -12.98901 -12.38247 -12.07451 -11.86014 -11.60170 -11.42742 -10.79011 -10.60119 -10.40972 -10.23675 -9.74746 -9.52686 -9.15420 -8.90692 -8.56758 -8.48754 -8.16090 -5.82873 -3.83063 3.42140 3.47663 3.48649 3.57355 3.93760 4.60215 5.05331 5.23473 5.30205 5.50495 5.65725 5.88986 6.07630 6.32726 6.45751 6.47755 6.59457 6.71197 6.83974 7.05625 7.42818 7.49259 7.53879 7.60600 7.85943 7.96925 8.24725 8.57355 9.06563 9.18036 9.78285 11.24141 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040058 B = 0.013614 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.820932 B = 2056.178306 C = 2497.873442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C 0.067 3.933 4 H 0.025 0.975 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 C -0.111 4.111 14 H 0.096 0.904 15 C -0.131 4.131 16 C 0.105 3.895 17 N -0.753 5.753 18 C 0.522 3.478 19 O -0.510 6.510 20 H 0.030 0.970 21 H 0.021 0.979 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.017 0.983 25 H 0.256 0.744 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -0.290 -11.183 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.152 4.152 3 C 0.048 3.952 4 H 0.043 0.957 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 C -0.132 4.132 14 H 0.114 0.886 15 C -0.169 4.169 16 C -0.020 4.020 17 N -0.411 5.411 18 C 0.309 3.691 19 O -0.383 6.383 20 H 0.049 0.951 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.339 -0.058 -10.483 10.568 hybrid contribution -0.096 0.782 0.581 0.979 sum -1.435 0.724 -9.902 10.032 Atomic orbital electron populations 1.21630 0.98064 0.97915 1.01155 1.21538 0.94346 0.98938 1.00343 1.18583 0.96154 0.91512 0.88970 0.95689 1.21079 1.30327 1.10753 0.90047 0.92333 1.24866 0.95476 0.95091 0.98692 1.69867 1.38573 1.23771 1.21690 0.86670 0.78525 0.80626 0.82716 1.20989 1.21532 1.19870 1.22151 1.00812 0.92429 0.97830 0.88644 1.22711 1.02344 0.96679 0.95163 1.21946 0.99864 0.86537 0.93619 1.46448 1.61472 1.20983 1.12173 1.21246 0.77604 0.89242 0.80997 1.90719 1.56761 1.48699 1.42109 0.95061 0.95978 0.91931 0.89058 0.96464 0.93372 0.90223 0.90169 0.91473 0.92194 0.76569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.36 37.15 0.35 -2.35 16 2 C -0.11 -2.58 5.22 -26.74 -0.14 -2.72 16 3 C 0.07 1.64 1.55 -91.77 -0.14 1.50 16 4 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 5 C -0.48 -13.56 6.15 -34.44 -0.21 -13.77 16 6 H 0.06 1.71 7.30 -52.49 -0.38 1.33 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.90 -26.18 11.35 55.43 0.63 -25.55 16 9 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.11 -2.23 1.93 -90.64 -0.17 -2.41 16 14 H 0.10 1.92 6.88 -51.93 -0.36 1.56 16 15 C -0.13 -1.98 5.47 -25.10 -0.14 -2.12 16 16 C 0.11 1.32 7.78 -3.12 -0.02 1.30 16 17 N -0.75 -11.91 6.25 -59.15 -0.37 -12.28 16 18 C 0.52 11.11 7.84 -10.76 -0.08 11.02 16 19 O -0.51 -13.27 16.50 5.56 0.09 -13.17 16 20 H 0.03 0.57 6.59 -51.93 -0.34 0.23 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 1.44 7.20 -51.93 -0.37 1.07 16 23 H 0.09 2.37 6.14 -51.93 -0.32 2.05 16 24 H 0.02 0.34 6.79 -51.93 -0.35 -0.02 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.08 1.24 7.51 -51.93 -0.39 0.85 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.40 5.39 8.96 -40.82 -0.37 5.02 16 LS Contribution 241.94 15.07 3.65 3.65 Total: -1.00 -31.92 241.94 -5.82 -37.74 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.13 Total: 0.07 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.66 Total: -7.98 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.26 Total: -37.83 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.92 -5.82 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.826 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds