Wall clock time and date at job start Mon Mar 30 2020 02:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 H 1.08997 * 109.47894 * 177.50160 * 3 2 1 5 5 C 1.50703 * 109.46803 * 57.50268 * 3 2 1 6 6 H 1.07997 * 120.00286 * 239.99883 * 5 3 2 7 7 C 1.37875 * 119.99758 * 60.00209 * 5 3 2 8 8 N 1.31513 * 120.00412 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00058 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47065 * 89.99895 * 9 7 5 11 11 H 1.48493 * 109.47298 * 210.00018 * 9 7 5 12 12 H 1.48502 * 109.46965 * 330.00227 * 9 7 5 13 13 C 1.52996 * 109.47262 * 297.50508 * 3 2 1 14 14 H 1.08998 * 110.43404 * 66.95327 * 13 3 2 15 15 C 1.54623 * 110.48807 * 304.41029 * 13 3 2 16 16 C 1.54478 * 101.76916 * 216.52048 * 15 13 3 17 17 N 1.46768 * 105.46722 * 25.41687 * 16 15 13 18 18 C 1.34649 * 111.33785 * 342.86784 * 17 16 15 19 19 O 1.21282 * 125.06813 * 180.52253 * 18 17 16 20 20 H 1.09003 * 109.47282 * 58.44132 * 1 2 3 21 21 H 1.09002 * 109.47193 * 178.43841 * 1 2 3 22 22 H 1.08998 * 109.47216 * 298.44021 * 1 2 3 23 23 H 1.08999 * 109.47299 * 120.00451 * 2 1 3 24 24 H 1.09004 * 109.47434 * 240.00367 * 2 1 3 25 25 H 0.96999 * 120.00606 * 180.02562 * 8 7 5 26 26 H 1.09002 * 110.97145 * 334.64657 * 15 13 3 27 27 H 1.09002 * 110.96794 * 98.36617 * 15 13 3 28 28 H 1.08996 * 110.24377 * 144.41097 * 16 15 13 29 29 H 1.08995 * 110.24899 * 266.33146 * 16 15 13 30 30 H 0.97006 * 124.34431 * 162.98397 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4429 0.0448 5 6 1.4877 2.1705 1.1984 6 1 0.8717 3.0469 1.0612 7 6 1.7690 1.7177 2.4699 8 7 2.5196 0.6508 2.6371 9 14 1.0851 2.6205 3.9555 10 1 -0.2389 2.0516 4.3141 11 1 2.0170 2.4657 5.1011 12 1 0.9333 4.0619 3.6320 13 6 1.5820 2.1454 -1.2794 14 1 0.4984 2.2632 -1.2818 15 6 2.0431 1.3551 -2.5259 16 6 2.3797 2.4938 -3.5141 17 7 2.7050 3.6548 -2.6773 18 6 2.2611 3.4902 -1.4169 19 8 2.3875 4.2993 -0.5223 20 1 -0.3634 0.5379 -0.8757 21 1 -0.3634 -1.0273 -0.0280 22 1 -0.3633 0.4894 0.9036 23 1 1.8933 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.7171 0.3320 3.5316 26 1 2.9271 0.7573 -2.3037 27 1 1.2380 0.7291 -2.9107 28 1 3.2375 2.2191 -4.1280 29 1 1.5187 2.7118 -4.1458 30 1 3.1777 4.4412 -2.9923 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:06 Heat of formation + Delta-G solvation = -72.963901 kcal Electronic energy + Delta-G solvation = -13134.440604 eV Core-core repulsion = 10928.094162 eV Total energy + Delta-G solvation = -2206.346442 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17974 -37.50752 -36.62892 -33.60630 -31.23062 -29.32538 -27.33307 -25.23136 -22.97805 -21.63784 -20.03028 -18.20645 -18.02920 -17.14824 -16.57040 -15.54794 -15.03058 -14.91277 -14.49674 -14.15297 -13.82113 -13.47194 -13.14116 -12.99414 -12.77169 -12.38974 -12.33105 -11.86700 -11.58467 -11.33730 -10.97200 -10.80777 -10.42203 -10.22588 -9.87391 -8.00882 -6.06001 1.36313 1.38728 1.49972 1.83709 2.48140 2.65811 3.27661 3.78891 3.89529 4.17290 4.45700 4.67538 4.71940 4.83800 4.85496 5.01442 5.05950 5.19582 5.30007 5.39452 5.62960 5.73238 5.80096 5.98205 6.08242 6.20615 6.31312 6.49445 6.99198 7.53310 7.58106 9.03941 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040058 B = 0.013614 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.820932 B = 2056.178306 C = 2497.873442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C 0.067 3.933 4 H -0.018 1.018 5 C -0.490 4.490 6 H 0.037 0.963 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.284 1.284 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.124 4.124 16 C 0.106 3.894 17 N -0.735 5.735 18 C 0.508 3.492 19 O -0.575 6.575 20 H 0.056 0.944 21 H 0.045 0.955 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.256 0.744 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -0.954 -13.607 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.048 3.952 4 H 0.001 0.999 5 C -0.528 4.528 6 H 0.056 0.944 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.134 4.134 14 H 0.115 0.885 15 C -0.161 4.161 16 C -0.017 4.017 17 N -0.391 5.391 18 C 0.296 3.704 19 O -0.453 6.453 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.049 -0.743 -12.972 13.154 hybrid contribution 0.158 1.001 1.260 1.618 sum -1.891 0.258 -11.711 11.866 Atomic orbital electron populations 1.21524 0.96300 0.99456 1.00696 1.21385 0.95823 0.97240 1.00079 1.18465 0.93368 0.93111 0.90264 0.99943 1.21296 1.29712 1.10031 0.91793 0.94426 1.25494 0.96137 0.95928 1.00980 1.69984 1.39518 1.24671 1.21938 0.85910 0.78672 0.78952 0.80281 1.19497 1.21082 1.20999 1.22026 1.00751 0.92556 0.98106 0.88505 1.22742 1.03069 0.97348 0.92984 1.22275 1.02812 0.83844 0.92785 1.46367 1.59614 1.22393 1.10740 1.21559 0.77705 0.89138 0.82012 1.90674 1.59523 1.50542 1.44587 0.92504 0.93557 0.95208 0.92801 0.93191 0.93487 0.90824 0.86961 0.87912 0.88843 0.75102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.36 71.98 0.67 -4.18 16 2 C -0.11 -4.79 5.22 30.59 0.16 -4.63 16 3 C 0.07 3.33 1.55 -11.54 -0.02 3.31 16 4 H -0.02 -1.01 8.13 -2.39 -0.02 -1.03 16 5 C -0.49 -28.33 6.15 25.60 0.16 -28.17 16 6 H 0.04 2.29 7.30 -2.91 -0.02 2.27 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -55.07 11.35 21.45 0.24 -54.83 16 9 Si 0.93 47.40 29.54 68.60 2.03 49.43 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 13 C -0.11 -4.42 1.93 -10.80 -0.02 -4.44 16 14 H 0.10 3.74 6.88 -2.39 -0.02 3.72 16 15 C -0.12 -3.26 5.47 31.65 0.17 -3.08 16 16 C 0.11 2.14 7.78 86.83 0.68 2.81 16 17 N -0.73 -21.36 6.25 -459.50 -2.87 -24.23 16 18 C 0.51 21.48 7.84 87.86 0.69 22.17 16 19 O -0.57 -30.90 16.50 -3.04 -0.05 -30.95 16 20 H 0.06 1.93 6.59 -2.39 -0.02 1.91 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 23 H 0.05 2.83 6.14 -2.39 -0.01 2.81 16 24 H 0.05 1.87 6.79 -2.38 -0.02 1.85 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.07 2.05 7.51 -2.39 -0.02 2.03 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.41 10.10 8.96 -92.70 -0.83 9.27 16 Total: -1.00 -73.26 241.94 2.59 -70.67 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.30 Total: 5.00 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 2.94 Total: -15.08 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.63 Total: -79.06 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.95 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -73.26 2.59 -70.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.295 kcal (2) G-P(sol) polarization free energy of solvation -73.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds