Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47305 * 2 1 4 4 H 1.09006 * 109.46795 * 175.02013 * 3 2 1 5 5 C 1.50703 * 109.47218 * 295.01838 * 3 2 1 6 6 H 1.07999 * 119.99999 * 114.44582 * 5 3 2 7 7 C 1.37876 * 119.99891 * 294.44730 * 5 3 2 8 8 N 1.31517 * 120.00104 * 350.66868 * 7 5 3 9 9 Si 1.86803 * 119.99728 * 170.66243 * 7 5 3 10 10 H 1.48498 * 109.47063 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46722 * 120.00141 * 9 7 5 12 12 H 1.48499 * 109.46939 * 239.99833 * 9 7 5 13 13 C 1.53003 * 109.47181 * 55.01863 * 3 2 1 14 14 H 1.08993 * 110.53913 * 298.84230 * 13 3 2 15 15 C 1.54627 * 110.48407 * 176.22542 * 13 3 2 16 16 C 1.54478 * 101.76382 * 216.52176 * 15 13 3 17 17 N 1.46769 * 105.47492 * 25.42351 * 16 15 13 18 18 C 1.34421 * 111.29673 * 342.97812 * 17 16 15 19 19 O 1.21280 * 124.94167 * 180.67353 * 18 17 16 20 20 H 1.09004 * 109.47182 * 302.60092 * 1 2 3 21 21 H 1.09008 * 109.47276 * 62.58946 * 1 2 3 22 22 H 1.08994 * 109.47947 * 182.59429 * 1 2 3 23 23 H 1.09006 * 109.46560 * 239.99901 * 2 1 3 24 24 H 1.09004 * 109.46992 * 120.00387 * 2 1 3 25 25 H 0.96998 * 119.99744 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.97441 * 334.64675 * 15 13 3 27 27 H 1.09001 * 110.96446 * 98.37410 * 15 13 3 28 28 H 1.09006 * 110.24633 * 144.41696 * 16 15 13 29 29 H 1.08993 * 110.25124 * 266.33164 * 16 15 13 30 30 H 0.96992 * 124.35518 * 162.98043 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0892 5 6 1.6410 2.1164 -1.2875 6 1 0.9437 2.9410 -1.2719 7 6 2.1661 1.6803 -2.4854 8 7 3.1478 0.8051 -2.4934 9 14 1.4831 2.3324 -4.0972 10 1 0.3912 3.2991 -3.8170 11 1 2.5645 3.0133 -4.8536 12 1 0.9510 1.2035 -4.9021 13 6 1.4303 2.1990 1.1819 14 1 0.3439 2.2260 1.0992 15 6 2.0031 3.6332 1.2598 16 6 2.0990 3.8515 2.7861 17 7 2.2205 2.5091 3.3668 18 6 1.8462 1.5619 2.4896 19 8 1.8380 0.3703 2.7153 20 1 -0.3634 0.5537 0.8658 21 1 -0.3634 0.4731 -0.9123 22 1 -0.3635 -1.0265 0.0465 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 3.5175 0.4986 -3.3362 26 1 2.9878 3.6858 0.7955 27 1 1.3205 4.3509 0.8047 28 1 2.9791 4.4478 3.0273 29 1 1.1986 4.3431 3.1542 30 1 2.5310 2.3286 4.2678 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = -72.907052 kcal Electronic energy + Delta-G solvation = -13124.835469 eV Core-core repulsion = 10918.491491 eV Total energy + Delta-G solvation = -2206.343977 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.30084 -37.32301 -36.76852 -33.64651 -31.58747 -28.97524 -27.56575 -25.23555 -22.50644 -22.24583 -20.05441 -18.31841 -18.16280 -17.00387 -16.44547 -15.48783 -15.05878 -15.01131 -14.46091 -14.34387 -14.06091 -13.53322 -13.03159 -12.83161 -12.77485 -12.38145 -12.31139 -11.89414 -11.63213 -11.33826 -11.22424 -10.85338 -10.35632 -10.14684 -9.88439 -8.04515 -6.11693 1.44135 1.47669 1.57428 1.75221 2.47699 2.63979 3.27742 3.75192 3.92711 4.16478 4.40465 4.63577 4.71648 4.74355 4.82777 4.96701 5.06425 5.27917 5.34931 5.44531 5.58839 5.63677 5.75059 5.88368 6.06313 6.08552 6.18484 6.42202 6.98954 7.46566 7.54294 9.05126 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043130 B = 0.012507 C = 0.010903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.047710 B = 2238.181512 C = 2567.403469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.070 3.930 4 H -0.012 1.012 5 C -0.504 4.504 6 H 0.067 0.933 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.947 3.053 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.289 1.289 13 C -0.114 4.114 14 H 0.103 0.897 15 C -0.116 4.116 16 C 0.106 3.894 17 N -0.728 5.728 18 C 0.510 3.490 19 O -0.575 6.575 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.036 0.964 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.257 0.743 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 8.320 8.171 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.051 3.949 4 H 0.006 0.994 5 C -0.542 4.542 6 H 0.086 0.914 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.773 3.227 10 H -0.180 1.180 11 H -0.212 1.212 12 H -0.216 1.216 13 C -0.135 4.135 14 H 0.121 0.879 15 C -0.154 4.154 16 C -0.018 4.018 17 N -0.383 5.383 18 C 0.298 3.702 19 O -0.455 6.455 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.641 7.671 8.067 11.713 hybrid contribution 0.256 -0.315 -0.751 0.854 sum -3.385 7.356 7.316 10.913 Atomic orbital electron populations 1.21502 0.96066 0.99340 1.00618 1.21480 0.96016 0.99437 0.98461 1.18425 0.93236 0.91692 0.91568 0.99426 1.21369 1.25396 1.16253 0.91173 0.91441 1.25723 0.94853 0.95774 1.02367 1.70143 1.25761 1.34065 1.26657 0.85675 0.78658 0.78153 0.80210 1.18027 1.21236 1.21588 1.22065 1.02056 0.97008 0.92414 0.87917 1.22545 1.02318 0.95052 0.95440 1.22301 1.04145 0.82762 0.92550 1.46251 1.67308 1.08294 1.16485 1.21506 0.75313 0.85676 0.87737 1.90606 1.56568 1.16781 1.81538 0.93343 0.93347 0.94499 0.95063 0.94549 0.93445 0.91797 0.88019 0.88129 0.88605 0.74778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 9.30 71.98 0.67 -4.56 16 2 C -0.12 -6.00 5.15 30.59 0.16 -5.84 16 3 C 0.07 3.51 1.42 -11.54 -0.02 3.49 16 4 H -0.01 -0.73 8.07 -2.38 -0.02 -0.75 16 5 C -0.50 -26.16 6.98 25.60 0.18 -25.98 16 6 H 0.07 3.29 7.72 -2.91 -0.02 3.27 16 7 C 0.01 0.58 5.16 84.65 0.44 1.02 16 8 N -0.93 -54.96 12.16 21.45 0.26 -54.70 16 9 Si 0.95 42.81 29.55 68.60 2.03 44.84 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 C -0.11 -4.48 1.89 -10.80 -0.02 -4.50 16 14 H 0.10 3.89 6.43 -2.39 -0.02 3.87 16 15 C -0.12 -3.51 6.12 31.65 0.19 -3.32 16 16 C 0.11 2.27 7.78 86.83 0.68 2.95 16 17 N -0.73 -20.27 6.24 -459.79 -2.87 -23.14 16 18 C 0.51 19.95 7.83 87.90 0.69 20.63 16 19 O -0.57 -27.09 15.22 -3.03 -0.05 -27.13 16 20 H 0.05 1.97 6.23 -2.38 -0.01 1.96 16 21 H 0.05 2.16 7.46 -2.38 -0.02 2.14 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.03 1.79 6.81 -2.38 -0.02 1.78 16 24 H 0.04 1.94 5.72 -2.39 -0.01 1.93 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 26 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 27 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.41 9.44 8.96 -92.71 -0.83 8.61 16 Total: -1.00 -67.57 242.29 2.64 -64.93 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.30 Total: 11.30 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 2.96 Total: -16.10 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.61 Total: -77.83 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.57 2.64 -64.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.973 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds