Wall clock time and date at job start Mon Mar 30 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.95009 * 305.70633 * 4 3 2 6 6 C 1.54850 * 111.08014 * 181.62739 * 4 3 2 7 7 N 1.47603 * 101.89574 * 218.77417 * 6 4 3 8 8 C 1.28643 * 108.54638 * 14.95857 * 7 6 4 9 9 C 1.50696 * 122.93712 * 180.40893 * 8 7 6 10 10 C 1.50696 * 109.47288 * 0.02562 * 9 8 7 11 11 H 1.08001 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00244 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99784 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00383 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46909 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47190 * 119.99807 * 14 12 10 17 17 H 1.48494 * 109.47350 * 239.99996 * 14 12 10 18 18 O 1.34654 * 114.14209 * 0.36608 * 8 7 6 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08994 * 110.94807 * 336.92890 * 6 4 3 27 27 H 1.09002 * 110.94656 * 100.62879 * 6 4 3 28 28 H 1.09004 * 109.47427 * 120.02414 * 9 8 7 29 29 H 1.09005 * 109.46994 * 240.01976 * 9 8 7 30 30 H 0.96997 * 119.99597 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9600 0.8484 0.8257 6 6 4.1268 2.8869 0.0404 7 7 5.2865 2.7918 -0.8677 8 6 5.1859 1.7041 -1.5473 9 6 6.2078 1.2797 -2.5703 10 6 7.3053 2.3100 -2.6415 11 1 7.2669 3.1844 -2.0089 12 6 8.3585 2.1362 -3.5143 13 7 8.4049 1.0716 -4.2851 14 14 9.7192 3.4129 -3.6020 15 1 9.4341 4.5072 -2.6394 16 1 11.0169 2.7777 -3.2585 17 1 9.7888 3.9685 -4.9774 18 8 4.0883 0.9773 -1.2642 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.3929 3.5984 -0.3381 27 1 4.4425 3.1543 1.0488 28 1 6.6312 0.3171 -2.2834 29 1 5.7297 1.1900 -3.5458 30 1 9.1457 0.9496 -4.8993 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260692164.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:17 Heat of formation + Delta-G solvation = -56.219148 kcal Electronic energy + Delta-G solvation = -12286.661713 eV Core-core repulsion = 10081.041378 eV Total energy + Delta-G solvation = -2205.620335 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.07907 -36.35605 -35.34561 -34.33035 -32.41895 -30.05779 -26.78797 -25.36478 -23.16465 -22.25387 -20.97216 -18.33764 -17.76088 -17.26799 -16.41483 -16.12354 -15.59366 -14.61595 -14.52179 -14.15471 -13.82425 -13.63330 -13.52347 -12.94772 -12.79105 -12.61432 -12.47920 -12.03142 -11.98261 -11.85787 -11.55963 -11.42856 -10.70672 -10.62693 -9.91316 -8.21725 -6.29264 1.31460 1.44185 1.44469 1.59628 2.33094 2.55224 3.14093 3.36209 3.57753 3.89432 4.02125 4.16762 4.29331 4.46117 4.58062 4.70098 4.73983 4.86426 4.99952 5.06823 5.14459 5.23252 5.24328 5.36150 5.43910 5.46759 5.80927 6.07692 6.83381 7.07357 7.39107 8.91597 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.078264 B = 0.007091 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.677051 B = 3947.852969 C = 4231.536481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.102 4.102 4 C 0.039 3.961 5 H 0.095 0.905 6 C -0.011 4.011 7 N -0.568 5.568 8 C 0.314 3.686 9 C 0.086 3.914 10 C -0.525 4.525 11 H 0.074 0.926 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.971 3.029 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.276 1.276 18 O -0.362 6.362 19 H 0.051 0.949 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -0.033 9.384 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.018 4.018 5 H 0.113 0.887 6 C -0.140 4.140 7 N -0.305 5.305 8 C 0.090 3.910 9 C 0.049 3.951 10 C -0.563 4.563 11 H 0.092 0.908 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.201 1.201 18 O -0.267 6.267 19 H 0.070 0.930 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.206 0.462 9.315 15.361 hybrid contribution 0.261 -0.133 -0.215 0.364 sum -11.944 0.328 9.100 15.020 Atomic orbital electron populations 1.21737 0.94125 1.02285 1.02291 1.21514 0.97140 0.95656 1.01979 1.21716 0.89298 0.98890 1.04068 1.24457 0.97656 0.95150 0.84490 0.88729 1.24292 0.93072 0.96670 1.00008 1.74858 1.22878 1.19137 1.13578 1.26238 0.84943 0.86499 0.93357 1.17889 0.89437 0.97578 0.90213 1.21435 1.05493 1.07212 1.22122 0.90790 1.25885 1.00693 0.97919 0.94848 1.70078 1.33042 1.29085 1.25009 0.85293 0.78269 0.78785 0.78050 1.19276 1.20102 1.20140 1.86985 1.40148 1.60308 1.39242 0.92980 0.92077 0.91331 0.91169 0.93544 0.91750 0.87135 0.88843 0.87200 0.94623 0.94847 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.13 -2.63 5.88 30.59 0.18 -2.45 16 3 C -0.10 -2.28 4.93 30.59 0.15 -2.13 16 4 C 0.04 1.20 3.72 31.22 0.12 1.31 16 5 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 6 C -0.01 -0.38 7.70 86.80 0.67 0.29 16 7 N -0.57 -26.01 10.21 -449.35 -4.59 -30.59 16 8 C 0.31 14.97 7.68 88.57 0.68 15.65 16 9 C 0.09 4.73 5.60 29.10 0.16 4.89 16 10 C -0.52 -30.63 8.95 25.60 0.23 -30.40 16 11 H 0.07 4.37 6.77 -2.91 -0.02 4.35 16 12 C 0.00 0.25 5.46 84.66 0.46 0.71 16 13 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 14 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 O -0.36 -14.86 10.74 -79.19 -0.85 -15.71 16 19 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 20 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.20 8.04 -2.39 -0.02 1.18 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.77 7.91 -2.39 -0.02 2.75 16 27 H 0.11 3.06 8.14 -2.39 -0.02 3.05 16 28 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.03 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.44 257.36 1.34 -64.11 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.10 Total: 4.26 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.36 Total: -13.80 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -4.30 Total: -86.10 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.85 Total: -15.71 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.44 1.34 -64.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692164.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.886 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds