Wall clock time and date at job start Mon Mar 30 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.95350 * 50.92634 * 4 3 2 6 6 C 1.54852 * 111.07513 * 175.00105 * 4 3 2 7 7 N 1.47597 * 101.89456 * 141.22025 * 6 4 3 8 8 C 1.28646 * 108.55009 * 345.04744 * 7 6 4 9 9 C 1.50700 * 122.93787 * 179.59340 * 8 7 6 10 10 C 1.50701 * 109.47560 * 0.02562 * 9 8 7 11 11 H 1.08003 * 119.99516 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00157 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00074 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99932 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46859 * 90.00296 * 14 12 10 16 16 H 1.48500 * 109.46714 * 210.00034 * 14 12 10 17 17 H 1.48501 * 109.47051 * 329.99882 * 14 12 10 18 18 O 1.34587 * 114.11971 * 359.59121 * 8 7 6 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.09000 * 110.94259 * 259.37045 * 6 4 3 27 27 H 1.09000 * 110.94450 * 23.07149 * 6 4 3 28 28 H 1.09001 * 109.46895 * 120.02637 * 9 8 7 29 29 H 1.09002 * 109.46684 * 240.02223 * 9 8 7 30 30 H 0.97001 * 120.00188 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9594 0.8008 -0.7911 6 6 4.1269 2.8817 -0.1266 7 7 5.2873 2.8398 0.7846 8 6 5.1873 1.7937 1.5267 9 6 6.2100 1.4299 2.5721 10 6 7.3068 2.4633 2.5830 11 1 7.2671 3.3001 1.9014 12 6 8.3610 2.3404 3.4631 13 7 8.4096 1.3212 4.2927 14 14 9.7210 3.6210 3.4760 15 1 9.3729 4.7029 4.4318 16 1 10.9963 2.9842 3.8922 17 1 9.8747 4.1935 2.1145 18 8 4.0894 1.0528 1.2878 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 4.4418 3.0896 -1.1492 27 1 3.3933 3.6142 0.2102 28 1 5.7324 1.3966 3.5514 29 1 6.6337 0.4526 2.3411 30 1 9.1514 1.2345 4.9116 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260692165.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:19 Heat of formation + Delta-G solvation = -56.119276 kcal Electronic energy + Delta-G solvation = -12280.953191 eV Core-core repulsion = 10075.337186 eV Total energy + Delta-G solvation = -2205.616005 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08678 -36.35921 -35.35051 -34.33072 -32.41896 -30.05636 -26.78833 -25.36115 -23.16631 -22.25071 -20.99402 -18.33363 -17.74057 -17.26555 -16.42243 -16.12568 -15.61037 -14.61944 -14.51275 -14.15765 -13.81759 -13.63595 -13.52426 -12.94559 -12.77699 -12.62337 -12.47188 -12.03694 -11.98238 -11.86032 -11.56059 -11.44581 -10.70880 -10.62122 -9.91238 -8.21415 -6.29123 1.31397 1.44410 1.45919 1.58143 2.32929 2.55158 3.14368 3.36101 3.57698 3.89353 4.01953 4.16433 4.29828 4.46072 4.58012 4.69473 4.73751 4.86433 5.00519 5.06554 5.14413 5.23237 5.24229 5.36101 5.43692 5.46776 5.80788 6.07790 6.83127 7.07374 7.39194 8.91669 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.079246 B = 0.007059 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.243850 B = 3965.789166 C = 4245.873780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.103 4.103 4 C 0.040 3.960 5 H 0.095 0.905 6 C -0.012 4.012 7 N -0.568 5.568 8 C 0.314 3.686 9 C 0.087 3.913 10 C -0.526 4.526 11 H 0.074 0.926 12 C 0.005 3.995 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.269 1.269 18 O -0.362 6.362 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 -0.561 -9.411 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.017 4.017 5 H 0.113 0.887 6 C -0.141 4.141 7 N -0.305 5.305 8 C 0.090 3.910 9 C 0.049 3.951 10 C -0.564 4.564 11 H 0.092 0.908 12 C -0.193 4.193 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.193 1.193 18 O -0.267 6.267 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.211 -0.068 -9.370 15.392 hybrid contribution 0.252 -0.114 0.221 0.354 sum -11.960 -0.182 -9.149 15.059 Atomic orbital electron populations 1.21736 0.94136 1.02298 1.02287 1.21523 0.97154 0.95606 1.02002 1.21717 0.89297 0.98929 1.04054 1.24468 0.97637 0.96065 0.83570 0.88730 1.24294 0.93066 0.96560 1.00133 1.74852 1.22880 1.20402 1.12334 1.26227 0.84942 0.86075 0.93792 1.17885 0.89412 0.97887 0.89897 1.21401 1.05529 1.09427 1.20018 0.90792 1.25879 1.00674 0.98006 0.94749 1.70067 1.33052 1.31304 1.22761 0.85342 0.77816 0.78619 0.78605 1.19809 1.20356 1.19330 1.86967 1.40079 1.61957 1.37722 0.91349 0.92045 0.92993 0.91103 0.93511 0.91742 0.87181 0.87198 0.88819 0.94864 0.94632 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.13 -2.60 5.91 30.59 0.18 -2.42 16 3 C -0.10 -2.28 4.92 30.59 0.15 -2.13 16 4 C 0.04 1.20 3.70 31.23 0.12 1.32 16 5 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 6 C -0.01 -0.38 7.70 86.80 0.67 0.29 16 7 N -0.57 -26.01 10.20 -449.44 -4.59 -30.59 16 8 C 0.31 14.98 7.68 88.58 0.68 15.66 16 9 C 0.09 4.75 5.60 29.10 0.16 4.91 16 10 C -0.53 -30.70 8.95 25.60 0.23 -30.47 16 11 H 0.07 4.36 6.77 -2.91 -0.02 4.34 16 12 C 0.00 0.28 5.46 84.65 0.46 0.74 16 13 N -0.93 -55.79 13.29 21.44 0.28 -55.50 16 14 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 O -0.36 -14.90 10.87 -78.52 -0.85 -15.75 16 19 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 20 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.09 2.78 7.91 -2.39 -0.02 2.76 16 28 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -65.39 257.59 1.33 -64.06 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.10 Total: 4.33 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.36 Total: -13.77 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -4.30 Total: -86.10 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.85 Total: -15.75 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.39 1.33 -64.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260692165.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.937 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds