Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47130 * 2 1 4 4 C 1.53002 * 109.47306 * 240.00118 * 2 1 3 5 5 C 1.50703 * 109.47039 * 64.99998 * 4 2 1 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99841 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00038 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47232 * 59.99387 * 9 7 5 11 11 H 1.48502 * 109.47273 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47098 * 299.99389 * 9 7 5 13 13 C 1.52998 * 109.47122 * 119.99699 * 2 1 3 14 14 H 1.09002 * 110.85521 * 63.79604 * 13 2 1 15 15 C 1.54663 * 110.85178 * 187.78516 * 13 2 1 16 16 N 1.46766 * 105.38117 * 143.79904 * 15 13 2 17 17 C 1.34426 * 111.29916 * 342.58270 * 16 15 13 18 18 O 1.21278 * 124.94275 * 180.69504 * 17 16 15 19 19 C 1.51285 * 110.11504 * 0.67929 * 17 16 15 20 20 H 1.08994 * 109.46955 * 60.00072 * 1 2 3 21 21 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47072 * 299.99972 * 1 2 3 23 23 H 1.08999 * 109.47198 * 185.00015 * 4 2 1 24 24 H 1.08996 * 109.46543 * 305.00173 * 4 2 1 25 25 H 0.97001 * 120.00419 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.40049 * 24.76782 * 15 13 2 27 27 H 1.09001 * 110.18102 * 262.70654 * 15 13 2 28 28 H 0.97001 * 124.35394 * 162.85956 * 16 15 13 29 29 H 1.08992 * 110.48514 * 134.92606 * 19 17 16 30 30 H 1.09001 * 110.48559 * 257.57305 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6756 -1.5191 -3.8512 9 14 1.4989 0.5630 -5.2496 10 1 2.0919 1.9230 -5.1870 11 1 1.9938 -0.1371 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0400 -0.7212 1.2493 14 1 1.7453 -1.7705 1.2390 15 6 3.5736 -0.5725 1.3833 16 7 3.8289 -0.4545 2.8237 17 6 2.7081 -0.1355 3.4938 18 8 2.6401 0.0348 4.6926 19 6 1.5438 -0.0195 2.5347 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1264 -0.7994 -1.2056 24 1 1.6054 -1.7197 -1.2951 25 1 2.9229 -1.8421 -4.7317 26 1 3.9152 0.3235 0.8650 27 1 4.0734 -1.4544 0.9827 28 1 4.6959 -0.5857 3.2385 29 1 0.6680 -0.5305 2.9344 30 1 1.3174 1.0278 2.3345 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = -63.384432 kcal Electronic energy + Delta-G solvation = -12531.499596 eV Core-core repulsion = 10325.568550 eV Total energy + Delta-G solvation = -2205.931045 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.08572 -36.88108 -34.55008 -32.40968 -29.81906 -27.45077 -26.69369 -23.60277 -21.56109 -20.23466 -19.14259 -17.19089 -16.25331 -15.83178 -14.75763 -14.53840 -13.81745 -13.48130 -13.14593 -12.84566 -12.49919 -12.32323 -11.72775 -11.32995 -11.06079 -10.93649 -10.77591 -10.41971 -10.25311 -9.81814 -9.78937 -9.14664 -9.00207 -8.91529 -8.38523 -6.03859 -4.05507 2.78185 3.30402 3.35578 3.37595 3.59077 4.42246 4.67564 4.83309 5.10703 5.32483 5.39074 5.79210 5.81786 5.91441 6.00690 6.05924 6.26466 6.35208 6.51749 6.87502 6.95445 7.01503 7.07605 7.17187 7.60685 7.75080 7.95331 8.38040 8.42563 9.00605 9.58594 11.07332 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069307 B = 0.007760 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.904024 B = 3607.280604 C = 3825.688280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 H 0.061 0.939 4 C 0.027 3.973 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.092 4.092 14 H 0.086 0.914 15 C 0.104 3.896 16 N -0.733 5.733 17 C 0.518 3.482 18 O -0.553 6.553 19 C -0.152 4.152 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.034 0.966 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.404 0.596 29 H 0.096 0.904 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 1.482 7.637 7.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.111 4.111 14 H 0.104 0.896 15 C -0.020 4.020 16 N -0.387 5.387 17 C 0.305 3.695 18 O -0.431 6.431 19 C -0.192 4.192 20 H 0.082 0.918 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.108 1.464 8.057 8.190 hybrid contribution 0.240 0.354 -0.913 1.009 sum 0.132 1.818 7.144 7.373 Atomic orbital electron populations 1.21737 0.95868 1.01091 1.00503 1.21256 0.95477 0.98999 0.93827 0.92043 1.19162 0.96220 0.95515 0.90145 1.21205 1.34946 1.08392 0.91049 0.92613 1.24999 0.95255 0.95041 0.99082 1.69939 1.38871 1.21139 1.23592 0.86707 0.78918 0.80130 0.82536 1.20306 1.21368 1.20279 1.22364 0.93075 1.00935 0.94767 0.89557 1.22316 0.97373 1.02914 0.79403 1.46363 1.11317 1.71387 1.09671 1.21116 0.86036 0.74515 0.87836 1.90701 1.85677 1.52068 1.14703 1.22465 0.97329 1.03861 0.95558 0.91764 0.93485 0.94717 0.96418 0.96454 0.92976 0.90423 0.90077 0.75799 0.88521 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.78 37.16 0.33 -1.95 16 2 C -0.08 -1.37 1.70 -90.62 -0.15 -1.52 16 3 H 0.06 1.11 8.05 -51.92 -0.42 0.69 16 4 C 0.03 0.61 4.37 -27.88 -0.12 0.49 16 5 C -0.52 -13.59 8.41 -34.44 -0.29 -13.88 16 6 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C -0.09 -1.38 2.69 -88.89 -0.24 -1.62 16 14 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.10 1.44 6.49 -3.02 -0.02 1.42 16 16 N -0.73 -9.77 6.24 -59.10 -0.37 -10.14 16 17 C 0.52 8.07 8.43 -10.86 -0.09 7.98 16 18 O -0.55 -10.50 18.03 5.56 0.10 -10.40 16 19 C -0.15 -2.10 5.35 -26.74 -0.14 -2.24 16 20 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.49 7.16 -51.93 -0.37 0.12 16 23 H 0.02 0.42 7.41 -51.93 -0.38 0.04 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.08 1.10 7.83 -51.93 -0.41 0.70 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.40 4.58 8.96 -40.82 -0.37 4.22 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.37 7.71 -51.93 -0.40 0.97 16 LS Contribution 250.23 15.07 3.77 3.77 Total: -1.00 -30.10 250.23 -5.94 -36.03 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.33 Total: -0.26 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.83 Total: -9.86 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.37 Total: -35.15 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.10 Total: -10.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.10 -5.94 -36.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.350 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds