Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47130 * 2 1 4 4 C 1.53002 * 109.47306 * 240.00118 * 2 1 3 5 5 C 1.50703 * 109.47039 * 64.99998 * 4 2 1 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99841 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00038 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99927 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47232 * 59.99387 * 9 7 5 11 11 H 1.48502 * 109.47273 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47098 * 299.99389 * 9 7 5 13 13 C 1.52998 * 109.47122 * 119.99699 * 2 1 3 14 14 H 1.09002 * 110.85521 * 63.79604 * 13 2 1 15 15 C 1.54663 * 110.85178 * 187.78516 * 13 2 1 16 16 N 1.46766 * 105.38117 * 143.79904 * 15 13 2 17 17 C 1.34426 * 111.29916 * 342.58270 * 16 15 13 18 18 O 1.21278 * 124.94275 * 180.69504 * 17 16 15 19 19 C 1.51285 * 110.11504 * 0.67929 * 17 16 15 20 20 H 1.08994 * 109.46955 * 60.00072 * 1 2 3 21 21 H 1.08997 * 109.46728 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47072 * 299.99972 * 1 2 3 23 23 H 1.08999 * 109.47198 * 185.00015 * 4 2 1 24 24 H 1.08996 * 109.46543 * 305.00173 * 4 2 1 25 25 H 0.97001 * 120.00419 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.40049 * 24.76782 * 15 13 2 27 27 H 1.09001 * 110.18102 * 262.70654 * 15 13 2 28 28 H 0.97001 * 124.35394 * 162.85956 * 16 15 13 29 29 H 1.08992 * 110.48514 * 134.92606 * 19 17 16 30 30 H 1.09001 * 110.48559 * 257.57305 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6756 -1.5191 -3.8512 9 14 1.4989 0.5630 -5.2496 10 1 2.0919 1.9230 -5.1870 11 1 1.9938 -0.1371 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0400 -0.7212 1.2493 14 1 1.7453 -1.7705 1.2390 15 6 3.5736 -0.5725 1.3833 16 7 3.8289 -0.4545 2.8237 17 6 2.7081 -0.1355 3.4938 18 8 2.6401 0.0348 4.6926 19 6 1.5438 -0.0195 2.5347 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1264 -0.7994 -1.2056 24 1 1.6054 -1.7197 -1.2951 25 1 2.9229 -1.8421 -4.7317 26 1 3.9152 0.3235 0.8650 27 1 4.0734 -1.4544 0.9827 28 1 4.6959 -0.5857 3.2385 29 1 0.6680 -0.5305 2.9344 30 1 1.3174 1.0278 2.3345 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = -83.776235 kcal Electronic energy + Delta-G solvation = -12532.383851 eV Core-core repulsion = 10325.568550 eV Total energy + Delta-G solvation = -2206.815300 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.30999 -38.25819 -36.05908 -34.26638 -31.21132 -28.76118 -28.34620 -25.30268 -23.02752 -21.40666 -20.56702 -18.60308 -18.08510 -17.11609 -16.42638 -16.00802 -15.17791 -14.81154 -14.58973 -14.21885 -14.00837 -13.83730 -13.32534 -12.88251 -12.72890 -12.54050 -12.25984 -12.14251 -11.75781 -11.37891 -11.20625 -10.92342 -10.62952 -10.44839 -10.08459 -8.11690 -6.18870 1.44923 1.45467 1.52959 1.56754 2.46552 2.47451 3.22901 3.48726 3.64247 3.88665 4.20163 4.51803 4.65678 4.67642 4.78076 4.79900 4.98530 5.03325 5.23052 5.38645 5.48885 5.58302 5.65122 5.82321 5.92565 5.98261 6.03724 6.37650 6.98355 7.26296 7.49131 8.99421 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069307 B = 0.007760 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.904024 B = 3607.280604 C = 3825.688280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.270 1.270 13 C -0.087 4.087 14 H 0.087 0.913 15 C 0.106 3.894 16 N -0.720 5.720 17 C 0.515 3.485 18 O -0.589 6.589 19 C -0.142 4.142 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.002 0.998 24 H -0.008 1.008 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.415 0.585 29 H 0.111 0.889 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 2.351 7.952 8.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.195 1.195 13 C -0.106 4.106 14 H 0.105 0.895 15 C -0.018 4.018 16 N -0.374 5.374 17 C 0.303 3.697 18 O -0.471 6.471 19 C -0.182 4.182 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.020 0.980 24 H 0.010 0.990 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.254 0.746 29 H 0.130 0.870 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.618 2.340 8.365 8.708 hybrid contribution 0.426 0.068 -1.017 1.105 sum -0.192 2.408 7.348 7.735 Atomic orbital electron populations 1.21700 0.94892 1.01194 1.01158 1.21059 0.96246 0.98574 0.92644 0.91824 1.19064 0.95132 0.94472 0.91966 1.21687 1.34123 1.08577 0.92264 0.92159 1.25821 0.95494 0.95990 1.02287 1.70063 1.40416 1.22805 1.24126 0.85712 0.78819 0.78933 0.78849 1.19442 1.21462 1.19525 1.22201 0.93707 1.00752 0.93946 0.89451 1.22267 0.96850 1.03144 0.79501 1.46291 1.11555 1.70224 1.09287 1.21361 0.86871 0.74004 0.87473 1.90690 1.86255 1.53941 1.16225 1.22435 0.97172 1.04587 0.94023 0.93738 0.93695 0.91392 0.97959 0.99008 0.93125 0.90487 0.89630 0.74604 0.87028 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.78 71.98 0.63 -3.57 16 2 C -0.07 -2.27 1.70 -10.79 -0.02 -2.29 16 3 H 0.06 2.16 8.05 -2.38 -0.02 2.14 16 4 C 0.03 1.42 4.37 29.85 0.13 1.55 16 5 C -0.53 -27.62 8.41 25.60 0.22 -27.40 16 6 H 0.06 3.03 7.06 -2.91 -0.02 3.01 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 9 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 13 C -0.09 -2.42 2.69 -9.67 -0.03 -2.45 16 14 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.11 2.77 6.49 86.90 0.56 3.33 16 16 N -0.72 -17.79 6.24 -459.48 -2.87 -20.66 16 17 C 0.51 15.00 8.43 87.90 0.74 15.74 16 18 O -0.59 -21.53 18.03 -3.02 -0.05 -21.58 16 19 C -0.14 -3.53 5.35 30.59 0.16 -3.37 16 20 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.70 7.16 -2.39 -0.02 1.69 16 23 H 0.00 0.10 7.41 -2.39 -0.02 0.08 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.08 2.06 7.83 -2.39 -0.02 2.04 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.41 8.64 8.96 -92.71 -0.83 7.81 16 29 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.12 2.64 7.71 -2.39 -0.02 2.63 16 Total: -1.00 -63.47 250.23 2.55 -60.93 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.29 Total: 8.55 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 2.86 Total: -17.91 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.58 Total: -74.59 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.47 2.55 -60.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.851 kcal (2) G-P(sol) polarization free energy of solvation -63.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds