Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 C 1.53000 * 109.46828 * 119.99622 * 2 1 3 5 5 C 1.50698 * 109.47465 * 295.00177 * 4 2 1 6 6 H 1.07996 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47068 * 119.99591 * 9 7 5 12 12 H 1.48496 * 109.47247 * 240.00113 * 9 7 5 13 13 C 1.52993 * 109.47422 * 239.99977 * 2 1 3 14 14 H 1.09006 * 110.88607 * 303.81107 * 13 2 1 15 15 C 1.54691 * 111.08578 * 67.66996 * 13 2 1 16 16 N 1.46766 * 105.53193 * 143.38036 * 15 13 2 17 17 C 1.34413 * 111.30127 * 343.07423 * 16 15 13 18 18 O 1.21285 * 124.94422 * 180.44579 * 17 16 15 19 19 C 1.51281 * 110.11904 * 0.41169 * 17 16 15 20 20 H 1.08999 * 109.47032 * 60.00259 * 1 2 3 21 21 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47451 * 300.00133 * 1 2 3 23 23 H 1.09003 * 109.47042 * 55.00518 * 4 2 1 24 24 H 1.09009 * 109.46832 * 175.00381 * 4 2 1 25 25 H 0.96999 * 119.99881 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.13899 * 24.40079 * 15 13 2 27 27 H 1.09003 * 110.29597 * 262.43776 * 15 13 2 28 28 H 0.97003 * 124.35056 * 163.06418 * 16 15 13 29 29 H 1.09002 * 110.48898 * 134.92948 * 19 17 16 30 30 H 1.08998 * 110.48664 * 257.43980 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0798 0.9742 2.3757 7 6 1.9930 -0.4016 3.7283 8 7 2.6762 -1.5186 3.8512 9 14 1.4994 0.5635 5.2496 10 1 0.7419 1.7744 4.8434 11 1 0.6456 -0.2853 6.1189 12 1 2.7177 0.9684 5.9959 13 6 2.0400 -0.7212 -1.2492 14 1 1.6353 -1.7317 -1.3070 15 6 1.7085 0.0813 -2.5294 16 7 2.8592 -0.1077 -3.4206 17 6 3.9291 -0.5637 -2.7467 18 8 5.0123 -0.7980 -3.2394 19 6 3.5858 -0.7415 -1.2841 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9234 -1.8415 4.7319 26 1 1.5868 1.1375 -2.2893 27 1 0.8029 -0.3072 -2.9953 28 1 2.8489 0.0731 -4.3736 29 1 3.9632 -1.6958 -0.9169 30 1 3.9915 0.0806 -0.6944 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -62.777401 kcal Electronic energy + Delta-G solvation = -12553.206185 eV Core-core repulsion = 10347.301462 eV Total energy + Delta-G solvation = -2205.904723 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05762 -36.85658 -34.56356 -32.31681 -29.83026 -27.76220 -26.22087 -23.88597 -21.46385 -20.16694 -19.14781 -17.16719 -16.28141 -15.81154 -14.73827 -14.52144 -13.74814 -13.46961 -13.19498 -12.84599 -12.52790 -12.27074 -11.67875 -11.21674 -11.04123 -10.91041 -10.88400 -10.39182 -10.34320 -9.81655 -9.51078 -9.17288 -8.99868 -8.96139 -8.36371 -6.01251 -4.02918 2.84117 3.29781 3.37993 3.40734 3.56249 4.44264 4.72402 4.86177 5.08472 5.35027 5.39924 5.64944 5.82276 5.90163 6.04540 6.17551 6.26533 6.38248 6.50861 6.86596 6.96196 7.01153 7.09018 7.15366 7.65376 7.78352 7.98228 8.40520 8.45386 9.03693 9.61023 11.09966 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054453 B = 0.008329 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.086059 B = 3360.767858 C = 3688.280843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 H 0.061 0.939 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.093 4.093 14 H 0.085 0.915 15 C 0.103 3.897 16 N -0.737 5.737 17 C 0.519 3.481 18 O -0.548 6.548 19 C -0.148 4.148 20 H 0.032 0.968 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.017 0.983 24 H 0.020 0.980 25 H 0.259 0.741 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.403 0.597 29 H 0.102 0.898 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 2.869 -10.104 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.112 4.112 14 H 0.103 0.897 15 C -0.021 4.021 16 N -0.392 5.392 17 C 0.306 3.694 18 O -0.426 6.426 19 C -0.188 4.188 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.240 0.760 29 H 0.120 0.880 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.349 2.608 -10.097 10.953 hybrid contribution -0.344 0.547 0.548 0.847 sum -3.694 3.155 -9.549 10.713 Atomic orbital electron populations 1.21742 0.95981 1.01044 1.00428 1.21248 0.95271 0.99038 0.93975 0.92041 1.19181 0.96487 0.95474 0.90029 1.21268 1.34808 1.08372 0.91032 0.92542 1.25014 0.95293 0.95066 0.99111 1.69966 1.38901 1.21144 1.23353 0.86595 0.78271 0.80108 0.83371 1.19797 1.21110 1.21093 1.22359 0.94018 1.00206 0.94571 0.89681 1.22311 0.88147 1.00851 0.90819 1.46308 1.13662 1.67968 1.11226 1.21246 0.83162 0.74756 0.90208 1.90706 1.24295 1.52412 1.75213 1.22420 0.97598 1.05878 0.92932 0.94921 0.93467 0.91724 0.96493 0.96148 0.93089 0.91024 0.90784 0.75964 0.87993 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.86 37.15 0.33 -1.87 16 2 C -0.08 -1.37 1.70 -90.63 -0.15 -1.52 16 3 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 4 C 0.03 0.60 4.31 -27.88 -0.12 0.48 16 5 C -0.52 -13.72 8.41 -34.44 -0.29 -14.01 16 6 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.09 -1.38 2.69 -88.88 -0.24 -1.62 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C 0.10 1.22 6.59 -3.01 -0.02 1.20 16 16 N -0.74 -9.37 6.24 -59.08 -0.37 -9.74 16 17 C 0.52 8.49 8.43 -10.86 -0.09 8.39 16 18 O -0.55 -10.96 18.03 5.55 0.10 -10.86 16 19 C -0.15 -2.39 5.26 -26.74 -0.14 -2.53 16 20 H 0.03 0.43 7.56 -51.93 -0.39 0.03 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 1.17 6.95 -51.93 -0.36 0.81 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.51 7.01 -51.92 -0.36 0.15 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.40 4.22 8.96 -40.82 -0.37 3.85 16 29 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.11 1.82 7.72 -51.93 -0.40 1.42 16 LS Contribution 250.28 15.07 3.77 3.77 Total: -1.00 -30.80 250.28 -5.93 -36.73 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.33 Total: -0.57 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.82 Total: -10.02 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.37 Total: -35.14 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.10 Total: -10.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.80 -5.93 -36.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.046 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds