Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 C 1.53000 * 109.46828 * 119.99622 * 2 1 3 5 5 C 1.50698 * 109.47465 * 295.00177 * 4 2 1 6 6 H 1.07996 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47199 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47068 * 119.99591 * 9 7 5 12 12 H 1.48496 * 109.47247 * 240.00113 * 9 7 5 13 13 C 1.52993 * 109.47422 * 239.99977 * 2 1 3 14 14 H 1.09006 * 110.88607 * 303.81107 * 13 2 1 15 15 C 1.54691 * 111.08578 * 67.66996 * 13 2 1 16 16 N 1.46766 * 105.53193 * 143.38036 * 15 13 2 17 17 C 1.34413 * 111.30127 * 343.07423 * 16 15 13 18 18 O 1.21285 * 124.94422 * 180.44579 * 17 16 15 19 19 C 1.51281 * 110.11904 * 0.41169 * 17 16 15 20 20 H 1.08999 * 109.47032 * 60.00259 * 1 2 3 21 21 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47451 * 300.00133 * 1 2 3 23 23 H 1.09003 * 109.47042 * 55.00518 * 4 2 1 24 24 H 1.09009 * 109.46832 * 175.00381 * 4 2 1 25 25 H 0.96999 * 119.99881 * 180.02562 * 8 7 5 26 26 H 1.09000 * 110.13899 * 24.40079 * 15 13 2 27 27 H 1.09003 * 110.29597 * 262.43776 * 15 13 2 28 28 H 0.97003 * 124.35056 * 163.06418 * 16 15 13 29 29 H 1.09002 * 110.48898 * 134.92948 * 19 17 16 30 30 H 1.08998 * 110.48664 * 257.43980 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0798 0.9742 2.3757 7 6 1.9930 -0.4016 3.7283 8 7 2.6762 -1.5186 3.8512 9 14 1.4994 0.5635 5.2496 10 1 0.7419 1.7744 4.8434 11 1 0.6456 -0.2853 6.1189 12 1 2.7177 0.9684 5.9959 13 6 2.0400 -0.7212 -1.2492 14 1 1.6353 -1.7317 -1.3070 15 6 1.7085 0.0813 -2.5294 16 7 2.8592 -0.1077 -3.4206 17 6 3.9291 -0.5637 -2.7467 18 8 5.0123 -0.7980 -3.2394 19 6 3.5858 -0.7415 -1.2841 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9234 -1.8415 4.7319 26 1 1.5868 1.1375 -2.2893 27 1 0.8029 -0.3072 -2.9953 28 1 2.8489 0.0731 -4.3736 29 1 3.9632 -1.6958 -0.9169 30 1 3.9915 0.0806 -0.6944 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -84.360793 kcal Electronic energy + Delta-G solvation = -12554.142111 eV Core-core repulsion = 10347.301462 eV Total energy + Delta-G solvation = -2206.840649 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.31285 -38.26658 -36.08893 -34.21838 -31.18192 -29.38247 -27.59086 -25.61672 -22.94315 -21.41676 -20.57029 -18.52027 -18.20701 -17.10956 -16.44447 -16.02540 -15.14289 -14.81099 -14.61749 -14.21231 -14.06291 -13.82636 -13.34906 -12.84313 -12.72392 -12.41817 -12.36728 -12.13821 -11.90429 -11.42697 -11.02523 -10.82470 -10.75941 -10.47821 -10.05964 -8.12910 -6.20729 1.41826 1.43519 1.53942 1.54794 2.44501 2.48735 3.21526 3.49634 3.64338 3.88304 4.19960 4.52332 4.65383 4.68853 4.77598 4.81530 4.99616 5.04902 5.24998 5.38405 5.49254 5.59957 5.65223 5.87232 5.91222 5.97430 6.02667 6.35648 6.97681 7.26762 7.47511 8.98813 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054453 B = 0.008329 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.086059 B = 3360.767858 C = 3688.280843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.063 0.937 4 C 0.028 3.972 5 C -0.525 4.525 6 H 0.063 0.937 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.285 1.285 13 C -0.088 4.088 14 H 0.088 0.912 15 C 0.110 3.890 16 N -0.716 5.716 17 C 0.518 3.482 18 O -0.591 6.591 19 C -0.151 4.151 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.042 0.958 23 H -0.010 1.010 24 H -0.005 1.005 25 H 0.259 0.741 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.419 0.581 29 H 0.086 0.914 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 4.275 -11.219 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.563 4.563 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.211 1.211 13 C -0.107 4.107 14 H 0.107 0.893 15 C -0.013 4.013 16 N -0.370 5.370 17 C 0.306 3.694 18 O -0.472 6.472 19 C -0.191 4.191 20 H 0.094 0.906 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.008 0.992 24 H 0.013 0.987 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.259 0.741 29 H 0.105 0.895 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.186 4.043 -11.238 13.021 hybrid contribution 0.200 0.100 0.894 0.921 sum -4.986 4.143 -10.345 12.208 Atomic orbital electron populations 1.21688 0.94244 1.01296 1.01516 1.21046 0.96595 0.98423 0.92483 0.91875 1.19096 0.94826 0.94570 0.92459 1.21748 1.33906 1.08542 0.92129 0.91841 1.25904 0.95526 0.96061 1.02566 1.70103 1.40557 1.22992 1.23984 0.85546 0.77888 0.79052 0.79460 1.18359 1.20864 1.21086 1.22226 0.92623 1.00746 0.95056 0.89338 1.22395 0.88660 1.01360 0.88906 1.46173 1.12703 1.66055 1.12074 1.21165 0.83266 0.74798 0.90212 1.90684 1.26138 1.54612 1.75805 1.22369 0.98873 1.04735 0.93149 0.90566 0.93667 0.93857 0.99174 0.98710 0.93187 0.89373 0.87106 0.74126 0.89525 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 8.86 71.98 0.64 -3.27 16 2 C -0.07 -2.29 1.70 -10.80 -0.02 -2.30 16 3 H 0.06 2.15 8.05 -2.38 -0.02 2.14 16 4 C 0.03 1.33 4.31 29.85 0.13 1.46 16 5 C -0.53 -28.04 8.41 25.60 0.22 -27.82 16 6 H 0.06 3.23 7.05 -2.91 -0.02 3.21 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 8 N -0.94 -56.04 13.29 21.45 0.28 -55.75 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C -0.09 -2.44 2.69 -9.66 -0.03 -2.47 16 14 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 15 C 0.11 2.13 6.59 86.90 0.57 2.70 16 16 N -0.72 -15.95 6.24 -459.44 -2.87 -18.81 16 17 C 0.52 16.43 8.43 87.90 0.74 17.18 16 18 O -0.59 -23.61 18.03 -3.05 -0.05 -23.66 16 19 C -0.15 -4.87 5.26 30.59 0.16 -4.71 16 20 H 0.08 1.63 7.56 -2.39 -0.02 1.62 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.48 6.95 -2.39 -0.02 1.46 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H -0.01 -0.29 7.01 -2.38 -0.02 -0.31 16 25 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.09 1.54 7.82 -2.39 -0.02 1.52 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.42 7.25 8.96 -92.71 -0.83 6.42 16 29 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.10 3.36 7.72 -2.39 -0.02 3.34 16 Total: -1.00 -67.82 250.28 2.56 -65.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.29 Total: 6.50 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 2.88 Total: -18.97 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -2.58 Total: -74.57 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.82 2.56 -65.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.099 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds