Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46923 * 2 1 4 4 C 1.52996 * 109.47310 * 239.99600 * 2 1 3 5 5 C 1.50704 * 109.46927 * 65.00297 * 4 2 1 6 6 H 1.07992 * 119.99914 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99747 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99609 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00256 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47419 * 89.99892 * 9 7 5 11 11 H 1.48494 * 109.47064 * 209.99991 * 9 7 5 12 12 H 1.48507 * 109.46724 * 329.99856 * 9 7 5 13 13 C 1.53007 * 109.46641 * 119.99683 * 2 1 3 14 14 H 1.09007 * 110.88666 * 56.19286 * 13 2 1 15 15 C 1.54474 * 110.97175 * 292.38132 * 13 2 1 16 16 N 1.46761 * 105.47258 * 216.46677 * 15 13 2 17 17 C 1.34417 * 111.30293 * 17.01799 * 16 15 13 18 18 O 1.21278 * 124.94576 * 179.55979 * 17 16 15 19 19 C 1.51286 * 110.11297 * 359.59072 * 17 16 15 20 20 H 1.09001 * 109.46954 * 60.00375 * 1 2 3 21 21 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47706 * 300.00043 * 1 2 3 23 23 H 1.09000 * 109.47128 * 185.00132 * 4 2 1 24 24 H 1.09003 * 109.47426 * 305.00321 * 4 2 1 25 25 H 0.96999 * 119.99226 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.24827 * 97.46491 * 15 13 2 27 27 H 1.09000 * 110.31659 * 335.50379 * 15 13 2 28 28 H 0.97006 * 124.35018 * 196.98768 * 16 15 13 29 29 H 1.09001 * 110.48746 * 102.43083 * 19 17 16 30 30 H 1.09000 * 110.48191 * 225.06920 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4018 -3.7282 8 7 1.6451 0.2771 -4.7994 9 14 2.9637 -1.9885 -3.9027 10 1 2.0246 -3.1328 -4.0200 11 1 3.8128 -1.9183 -5.1189 12 1 3.8253 -2.1757 -2.7076 13 6 2.0399 -0.7212 1.2494 14 1 1.6352 -1.7317 1.3072 15 6 1.7063 0.0817 2.5262 16 7 2.8548 -0.1088 3.4198 17 6 3.9259 -0.5652 2.7479 18 8 5.0077 -0.8008 3.2428 19 6 3.5856 -0.7414 1.2844 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.1264 -0.7995 -1.2054 24 1 1.6054 -1.7199 -1.2951 25 1 1.8931 -0.0455 -5.6799 26 1 0.7993 -0.3063 2.9896 27 1 1.5852 1.1384 2.2878 28 1 2.8427 0.0718 4.3728 29 1 3.9914 0.0819 0.6966 30 1 3.9632 -1.6958 0.9173 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -59.126523 kcal Electronic energy + Delta-G solvation = -12607.505958 eV Core-core repulsion = 10401.759550 eV Total energy + Delta-G solvation = -2205.746409 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17131 -36.98316 -34.67233 -32.30893 -29.99690 -28.23923 -26.45694 -23.75576 -21.29512 -20.24314 -19.23212 -17.28743 -16.72930 -15.88529 -14.85264 -14.39206 -13.79059 -13.57020 -13.25880 -13.02102 -12.67024 -12.46224 -11.94958 -11.41559 -11.12574 -11.09871 -10.85995 -10.56237 -9.92055 -9.80090 -9.60652 -9.44759 -9.10679 -9.04249 -8.54724 -6.05525 -4.03147 2.74719 3.29954 3.38546 3.41187 3.47906 4.44200 4.61039 4.72962 4.96535 5.28478 5.28977 5.57321 5.72101 5.78631 5.92339 6.03735 6.15102 6.25579 6.40220 6.70558 6.82765 6.90578 6.99211 7.06860 7.23395 7.38781 7.78026 8.36293 8.51926 8.99433 9.57323 11.07739 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044537 B = 0.009662 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.545860 B = 2897.107445 C = 3333.759739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 H 0.068 0.932 4 C -0.011 4.011 5 C -0.516 4.516 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 C -0.096 4.096 14 H 0.086 0.914 15 C 0.104 3.896 16 N -0.736 5.736 17 C 0.519 3.481 18 O -0.547 6.547 19 C -0.151 4.151 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.404 0.596 29 H 0.110 0.890 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -1.512 12.726 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 H 0.086 0.914 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 C -0.115 4.115 14 H 0.104 0.896 15 C -0.020 4.020 16 N -0.391 5.391 17 C 0.306 3.694 18 O -0.425 6.425 19 C -0.191 4.191 20 H 0.088 0.912 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.242 0.758 29 H 0.129 0.871 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.887 -1.659 12.655 12.794 hybrid contribution 0.365 -0.726 0.104 0.819 sum -0.521 -2.385 12.760 12.991 Atomic orbital electron populations 1.21755 0.95504 1.01124 1.00992 1.21063 0.95629 0.99141 0.92781 0.91392 1.19662 0.96217 0.95827 0.93113 1.21125 1.35526 1.09655 0.89135 0.90840 1.25029 0.95594 0.96926 0.95977 1.69914 1.47025 1.39324 0.98055 0.86826 0.80673 0.84271 0.77811 1.20407 1.21493 1.18904 1.22366 0.93959 1.00304 0.94890 0.89609 1.22261 0.88262 1.00950 0.90573 1.46304 1.13648 1.67855 1.11276 1.21181 0.83186 0.74877 0.90115 1.90711 1.24375 1.52364 1.75071 1.22454 0.97639 1.05718 0.93315 0.91191 0.93519 0.94642 0.96297 0.96965 0.92786 0.90641 0.90798 0.75839 0.87145 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.86 37.16 0.33 -1.85 16 2 C -0.07 -1.15 1.70 -90.62 -0.15 -1.30 16 3 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 4 C -0.01 -0.24 3.38 -27.88 -0.09 -0.33 16 5 C -0.52 -13.84 8.96 -34.44 -0.31 -14.15 16 6 H 0.07 2.11 7.30 -52.49 -0.38 1.73 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 13 C -0.10 -1.33 2.68 -88.99 -0.24 -1.57 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.10 1.15 6.57 -3.13 -0.02 1.13 16 16 N -0.74 -8.84 6.24 -59.21 -0.37 -9.21 16 17 C 0.52 8.06 8.43 -10.86 -0.09 7.96 16 18 O -0.55 -10.51 18.03 5.56 0.10 -10.41 16 19 C -0.15 -2.26 5.26 -26.74 -0.14 -2.40 16 20 H 0.07 1.30 6.95 -51.93 -0.36 0.94 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.03 0.45 7.55 -51.93 -0.39 0.06 16 23 H 0.02 0.41 6.07 -51.93 -0.32 0.10 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.79 7.83 -51.93 -0.41 0.39 16 28 H 0.40 3.99 8.96 -40.82 -0.37 3.62 16 29 H 0.11 1.70 7.73 -51.93 -0.40 1.30 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -31.38 246.65 -5.56 -36.94 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.29 Total: -0.37 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.82 Total: -10.75 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.40 Total: -35.70 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.10 Total: -10.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.38 -5.56 -36.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.186 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds