Wall clock time and date at job start Mon Mar 30 2020 02:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46923 * 2 1 4 4 C 1.52996 * 109.47310 * 239.99600 * 2 1 3 5 5 C 1.50704 * 109.46927 * 65.00297 * 4 2 1 6 6 H 1.07992 * 119.99914 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99747 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99609 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00256 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47419 * 89.99892 * 9 7 5 11 11 H 1.48494 * 109.47064 * 209.99991 * 9 7 5 12 12 H 1.48507 * 109.46724 * 329.99856 * 9 7 5 13 13 C 1.53007 * 109.46641 * 119.99683 * 2 1 3 14 14 H 1.09007 * 110.88666 * 56.19286 * 13 2 1 15 15 C 1.54474 * 110.97175 * 292.38132 * 13 2 1 16 16 N 1.46761 * 105.47258 * 216.46677 * 15 13 2 17 17 C 1.34417 * 111.30293 * 17.01799 * 16 15 13 18 18 O 1.21278 * 124.94576 * 179.55979 * 17 16 15 19 19 C 1.51286 * 110.11297 * 359.59072 * 17 16 15 20 20 H 1.09001 * 109.46954 * 60.00375 * 1 2 3 21 21 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47706 * 300.00043 * 1 2 3 23 23 H 1.09000 * 109.47128 * 185.00132 * 4 2 1 24 24 H 1.09003 * 109.47426 * 305.00321 * 4 2 1 25 25 H 0.96999 * 119.99226 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.24827 * 97.46491 * 15 13 2 27 27 H 1.09000 * 110.31659 * 335.50379 * 15 13 2 28 28 H 0.97006 * 124.35018 * 196.98768 * 16 15 13 29 29 H 1.09001 * 110.48746 * 102.43083 * 19 17 16 30 30 H 1.09000 * 110.48191 * 225.06920 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0801 0.9740 -2.3757 7 6 1.9934 -0.4018 -3.7282 8 7 1.6451 0.2771 -4.7994 9 14 2.9637 -1.9885 -3.9027 10 1 2.0246 -3.1328 -4.0200 11 1 3.8128 -1.9183 -5.1189 12 1 3.8253 -2.1757 -2.7076 13 6 2.0399 -0.7212 1.2494 14 1 1.6352 -1.7317 1.3072 15 6 1.7063 0.0817 2.5262 16 7 2.8548 -0.1088 3.4198 17 6 3.9259 -0.5652 2.7479 18 8 5.0077 -0.8008 3.2428 19 6 3.5856 -0.7414 1.2844 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.1264 -0.7995 -1.2054 24 1 1.6054 -1.7199 -1.2951 25 1 1.8931 -0.0455 -5.6799 26 1 0.7993 -0.3063 2.9896 27 1 1.5852 1.1384 2.2878 28 1 2.8427 0.0718 4.3728 29 1 3.9914 0.0819 0.6966 30 1 3.9632 -1.6958 0.9173 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:12 Heat of formation + Delta-G solvation = -81.945784 kcal Electronic energy + Delta-G solvation = -12608.495476 eV Core-core repulsion = 10401.759550 eV Total energy + Delta-G solvation = -2206.735926 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32513 -38.30301 -36.10467 -34.26170 -31.28701 -29.82090 -27.68132 -25.36772 -22.73401 -21.39859 -20.60015 -18.88590 -18.29706 -17.10151 -16.31781 -16.01297 -15.15154 -15.01903 -14.56128 -14.36814 -14.20073 -13.86142 -13.50535 -12.87467 -12.76697 -12.43237 -12.38150 -12.01202 -11.68820 -11.43106 -11.07970 -10.98582 -10.78760 -10.69063 -10.05790 -8.22429 -6.23426 1.38209 1.41183 1.51329 1.55256 2.40533 2.48536 3.14103 3.48083 3.61671 3.86376 4.20113 4.47542 4.61908 4.65458 4.74643 4.80074 4.94477 5.02010 5.16305 5.26028 5.40156 5.50119 5.62192 5.78592 5.80638 5.87906 6.03062 6.38557 6.85599 7.26970 7.40320 8.94156 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044537 B = 0.009662 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.545860 B = 2897.107445 C = 3333.759739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 H 0.059 0.941 4 C -0.012 4.012 5 C -0.514 4.514 6 H 0.039 0.961 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.245 1.245 13 C -0.088 4.088 14 H 0.100 0.900 15 C 0.108 3.892 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.591 6.591 19 C -0.155 4.155 20 H 0.032 0.968 21 H 0.053 0.947 22 H 0.074 0.926 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.262 0.738 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.418 0.582 29 H 0.101 0.899 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -2.614 14.803 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.049 4.049 5 C -0.552 4.552 6 H 0.057 0.943 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.168 1.168 13 C -0.107 4.107 14 H 0.118 0.882 15 C -0.015 4.015 16 N -0.372 5.372 17 C 0.304 3.696 18 O -0.473 6.473 19 C -0.195 4.195 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.093 0.907 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.258 0.742 29 H 0.119 0.881 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.322 -2.748 14.772 15.084 hybrid contribution 0.414 -0.286 -0.541 0.739 sum -0.909 -3.034 14.231 14.579 Atomic orbital electron populations 1.21702 0.94501 1.01666 1.01123 1.20912 0.96416 0.98443 0.92267 0.92250 1.19656 0.96309 0.95769 0.93170 1.21526 1.33823 1.08683 0.91187 0.94313 1.25959 0.97123 1.00669 0.95781 1.70074 1.49324 1.41652 0.98675 0.85793 0.79465 0.80001 0.78223 1.19421 1.21838 1.16792 1.22220 0.92843 1.01072 0.94544 0.88215 1.22351 0.88816 1.01271 0.89110 1.46211 1.12837 1.66053 1.12063 1.21218 0.83178 0.74804 0.90372 1.90691 1.26208 1.54597 1.75757 1.22450 0.98606 1.05294 0.93130 0.94857 0.92744 0.90736 0.96229 0.96390 0.92897 0.87126 0.89831 0.74248 0.88070 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 8.86 71.98 0.64 -3.28 16 2 C -0.06 -1.97 1.70 -10.79 -0.02 -1.99 16 3 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 4 C -0.01 -0.49 3.38 29.85 0.10 -0.39 16 5 C -0.51 -27.93 8.96 25.60 0.23 -27.71 16 6 H 0.04 2.31 7.30 -2.91 -0.02 2.29 16 7 C 0.00 0.03 5.47 84.65 0.46 0.49 16 8 N -0.96 -59.30 13.96 21.45 0.30 -59.00 16 9 Si 0.94 43.59 27.47 68.60 1.88 45.47 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 13 C -0.09 -2.13 2.68 -9.74 -0.03 -2.16 16 14 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 15 C 0.11 1.90 6.57 86.83 0.57 2.47 16 16 N -0.72 -14.68 6.24 -459.82 -2.87 -17.55 16 17 C 0.52 14.95 8.43 87.90 0.74 15.70 16 18 O -0.59 -22.09 18.03 -3.02 -0.05 -22.15 16 19 C -0.15 -4.31 5.26 30.59 0.16 -4.15 16 20 H 0.03 1.21 6.95 -2.39 -0.02 1.20 16 21 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 22 H 0.07 1.61 7.55 -2.39 -0.02 1.59 16 23 H 0.02 0.83 6.07 -2.39 -0.01 0.81 16 24 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.41 7.83 -2.39 -0.02 1.39 16 28 H 0.42 6.69 8.96 -92.70 -0.83 5.86 16 29 H 0.10 3.01 7.73 -2.39 -0.02 2.99 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -69.44 246.65 2.36 -67.08 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.24 Total: 7.15 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 2.86 Total: -21.01 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.57 Total: -76.54 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -69.44 2.36 -67.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.866 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds