Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 H 1.09006 * 109.47253 * 179.31961 * 3 2 1 5 5 C 1.50693 * 109.47431 * 59.31624 * 3 2 1 6 6 H 1.08009 * 119.99934 * 244.33159 * 5 3 2 7 7 C 1.37872 * 120.00220 * 64.33126 * 5 3 2 8 8 N 1.31517 * 119.99810 * 8.21954 * 7 5 3 9 9 Si 1.86801 * 120.00307 * 187.94928 * 7 5 3 10 10 H 1.48501 * 109.47157 * 89.99787 * 9 7 5 11 11 H 1.48501 * 109.47345 * 210.00200 * 9 7 5 12 12 H 1.48501 * 109.47073 * 329.99915 * 9 7 5 13 13 C 1.53005 * 109.47150 * 299.31449 * 3 2 1 14 14 H 1.09004 * 110.85422 * 60.79495 * 13 3 2 15 15 C 1.54484 * 110.97054 * 184.58408 * 13 3 2 16 16 N 1.46762 * 105.46910 * 143.53587 * 15 13 3 17 17 C 1.34420 * 111.30594 * 342.98260 * 16 15 13 18 18 O 1.21276 * 124.94373 * 180.44696 * 17 16 15 19 19 C 1.51285 * 110.11367 * 0.40722 * 17 16 15 20 20 H 1.09000 * 109.46971 * 305.06742 * 1 2 3 21 21 H 1.09002 * 109.47460 * 65.06128 * 1 2 3 22 22 H 1.08997 * 109.47429 * 185.06438 * 1 2 3 23 23 H 1.09003 * 109.46977 * 239.99960 * 2 1 3 24 24 H 1.09001 * 109.47105 * 119.99550 * 2 1 3 25 25 H 0.97001 * 120.00071 * 3.53896 * 8 7 5 26 26 H 1.09001 * 110.24232 * 262.53344 * 15 13 3 27 27 H 1.08995 * 110.24450 * 24.53844 * 15 13 3 28 28 H 0.96996 * 124.34441 * 162.96518 * 16 15 13 29 29 H 1.08994 * 110.48783 * 257.57578 * 19 17 16 30 30 H 1.08998 * 110.48133 * 134.93017 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0122 5 6 1.5239 2.1578 1.2218 6 1 0.8477 2.9930 1.1133 7 6 1.9149 1.7462 2.4782 8 7 2.8586 0.8395 2.6091 9 14 1.1096 2.4816 3.9948 10 1 -0.0758 1.6692 4.3691 11 1 2.0810 2.4866 5.1180 12 1 0.6833 3.8739 3.7030 13 6 1.5441 2.1588 -1.2578 14 1 0.4547 2.1841 -1.2860 15 6 2.1329 3.5840 -1.3508 16 7 2.3785 3.8136 -2.7794 17 6 2.3801 2.6583 -3.4666 18 8 2.5667 2.5607 -4.6609 19 6 2.1163 1.4974 -2.5331 20 1 -0.3633 0.5904 0.8411 21 1 -0.3634 0.4333 -0.9318 22 1 -0.3634 -1.0236 0.0907 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3152 0.4980 1.8244 26 1 1.4181 4.3130 -0.9691 27 1 3.0675 3.6431 -0.7932 28 1 2.5211 4.6869 -3.1767 29 1 3.0437 0.9714 -2.3068 30 1 1.3865 0.8154 -2.9694 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711302.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = -61.756916 kcal Electronic energy + Delta-G solvation = -12944.558531 eV Core-core repulsion = 10738.698060 eV Total energy + Delta-G solvation = -2205.860471 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.88769 -36.80393 -34.77521 -31.77494 -30.00064 -27.72473 -25.51497 -23.75731 -21.43133 -20.13546 -19.01408 -16.94410 -16.80228 -15.44675 -14.50288 -13.95759 -13.78723 -13.49108 -13.17205 -12.84520 -12.56297 -12.31045 -11.45497 -11.01746 -10.93340 -10.83471 -10.72499 -10.16363 -10.06097 -9.77524 -9.59439 -9.28243 -8.71907 -8.48587 -8.30685 -6.37635 -4.09629 2.94640 3.40596 3.41524 3.57353 3.77457 4.48279 4.92071 5.17012 5.32360 5.43798 5.69530 6.02335 6.07850 6.14355 6.22202 6.36566 6.38915 6.51983 6.71762 6.80467 7.11915 7.14571 7.27520 7.32350 7.44552 7.51294 8.16082 8.39075 8.59132 8.82356 9.59987 10.99028 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048261 B = 0.010706 C = 0.009671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.042795 B = 2614.836314 C = 2894.469718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C 0.044 3.956 4 H 0.022 0.978 5 C -0.590 4.590 6 H 0.050 0.950 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 1.061 2.939 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.289 1.289 13 C -0.078 4.078 14 H 0.080 0.920 15 C 0.112 3.888 16 N -0.735 5.735 17 C 0.518 3.482 18 O -0.558 6.558 19 C -0.155 4.155 20 H 0.067 0.933 21 H 0.035 0.965 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.064 0.936 25 H 0.272 0.728 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.401 0.599 29 H 0.100 0.900 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 2.973 -4.354 5.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.026 3.974 4 H 0.040 0.960 5 C -0.628 4.628 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.890 3.110 10 H -0.215 1.215 11 H -0.212 1.212 12 H -0.216 1.216 13 C -0.097 4.097 14 H 0.099 0.901 15 C -0.012 4.012 16 N -0.389 5.389 17 C 0.305 3.695 18 O -0.437 6.437 19 C -0.195 4.195 20 H 0.086 0.914 21 H 0.054 0.946 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.238 0.762 29 H 0.118 0.882 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.633 2.732 -3.242 4.991 hybrid contribution 0.048 0.506 -1.703 1.777 sum -2.584 3.238 -4.945 6.452 Atomic orbital electron populations 1.21645 0.97153 0.99021 1.01247 1.21584 0.95521 0.99200 0.99407 1.18863 0.95570 0.91622 0.91391 0.96017 1.21838 1.31405 1.17909 0.91677 0.93188 1.25641 0.95780 0.95686 1.00932 1.70759 1.21554 1.28116 1.34116 0.83657 0.75969 0.75546 0.75846 1.21511 1.21247 1.21554 1.22213 1.00135 0.92681 0.94699 0.90142 1.22194 1.01399 0.98624 0.78936 1.46426 1.72960 1.08791 1.10704 1.21174 0.74548 0.86306 0.87473 1.90677 1.51543 1.86556 1.14925 1.22493 1.03678 0.96843 0.96443 0.91376 0.94628 0.95506 0.95625 0.91773 0.91668 0.90771 0.90605 0.76161 0.88188 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.29 37.16 0.35 -2.23 16 2 C -0.12 -2.49 5.23 -26.73 -0.14 -2.63 16 3 C 0.04 0.96 1.05 -91.77 -0.10 0.86 16 4 H 0.02 0.51 7.46 -51.93 -0.39 0.13 16 5 C -0.59 -14.35 6.63 -34.45 -0.23 -14.57 16 6 H 0.05 1.21 7.72 -52.48 -0.41 0.81 16 7 C 0.02 0.63 5.22 -17.82 -0.09 0.54 16 8 N -0.91 -25.30 12.88 55.43 0.71 -24.58 16 9 Si 1.06 23.51 29.91 -169.99 -5.08 18.42 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 13 C -0.08 -1.41 2.22 -88.98 -0.20 -1.61 16 14 H 0.08 1.46 6.70 -51.93 -0.35 1.11 16 15 C 0.11 1.84 6.82 -3.12 -0.02 1.82 16 16 N -0.73 -11.36 6.24 -59.20 -0.37 -11.73 16 17 C 0.52 9.27 8.43 -10.86 -0.09 9.18 16 18 O -0.56 -11.67 18.03 5.56 0.10 -11.57 16 19 C -0.15 -2.62 5.42 -26.74 -0.14 -2.76 16 20 H 0.07 1.44 7.02 -51.93 -0.36 1.07 16 21 H 0.03 0.62 6.76 -51.93 -0.35 0.27 16 22 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.03 0.48 7.34 -51.93 -0.38 0.10 16 24 H 0.06 1.52 6.33 -51.93 -0.33 1.19 16 25 H 0.27 7.50 6.13 -40.82 -0.25 7.25 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 28 H 0.40 5.25 8.96 -40.82 -0.37 4.88 16 29 H 0.10 1.69 7.85 -51.93 -0.41 1.28 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 243.26 15.07 3.67 3.67 Total: -1.00 -28.29 243.26 -5.70 -33.99 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.06 Total: 3.21 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.67 Total: -11.41 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.34 Total: -36.31 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.10 Total: -11.57 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.08 Total: 18.42 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.29 -5.70 -33.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711302.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.762 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds